RetrogeneDB ID: | retro_nleu_2473 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397359.1:7188084..7188642(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSNLEG00000018740 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSNLEG00000003284 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.7 % |
Parental protein coverage: | 95.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQICVS-GYRRVFEEYMRVISQRYPDIRIEGENYLPQ |
AASAMVRSEASANLG.VPSKRLKMQYATG.LLKFQIC.S.GYRRVFEEYMRVISQRYPDIRIEGENYLPQ | |
Retrocopy | AASAMVRSEASANLGSVPSKRLKMQYATGLLLKFQICIS*GYRRVFEEYMRVISQRYPDIRIEGENYLPQ |
Parental | PIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAF |
PIYRHIASFL.VFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYA.MMVFFLSNMI.NQCMSTGAF | |
Retrocopy | PIYRHIASFLAVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYAYMMVFFLSNMIGNQCMSTGAF |
Parental | EITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS |
EITLNDV.VWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS | |
Retrocopy | EITLNDVTVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001394 | 2 retrocopies | |
Equus caballus | ENSECAG00000025123 | 2 retrocopies | |
Homo sapiens | ENSG00000198843 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028291 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014738 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000021273 | 1 retrocopy | |
Mus musculus | ENSMUSG00000075700 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003284 | 2 retrocopies |
retro_nleu_2473 , retro_nleu_972,
|
Ochotona princeps | ENSOPRG00000014425 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000039581 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013507 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000018506 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000007410 | 3 retrocopies |