RetrogeneDB ID:

retro_nleu_2643

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397386.1:190973..191628(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000073578
Ensembl ID:ENSNLEG00000001292
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2643
GGCACACGTGGTGCTGGTTGTCTCATTACGGAAGGATGTCGTGGAGAGGGAGGCATTCTCATTAACAGTCAAGGCGAAAG
GTTTATGGAGCGATACGCCCCTGTCGCGAAGGACCTGGCGTCTAGAGATGTGGTGTCTCAGTCGATGACTCTGGAGATCC
GCAAAGGAAGAGGCTGTGGCCCTGAGGAAGATCACGTCTACCTGCAGCTGCACCATCTACCTCCAGAGCAGCTGGCCACG
CGCCTGCGCGGCATTTCAGAGACAGCCGTGATCTTCACTGGCGTGGACGTCACGAAGGAGCCAATCCCTGTCCTCCCCAC
CGTGCATTACAACATGGATGGCATTCCCACCAGCTACAAGGGGCAGGTCCTGAGGCATGTGAATGGCTAGGATCAGATTG
TGCCCGGCCTGTACACCTGTGGGGAGGCCGCCTGTGCCTCGGTACATGGTGCCAACCGCCTCGGGACAAACTCGCTGTTG
GACCTGGTTGTCTGGTCAGGCATGTGCCCTGAGCATCGAAAAGTCATGCAGGCCTGGAGATAAAGTCCCTCCAATTAAAC
CAAATGCTGGGGAAGAATCTGTCATGAATCTTGACAAATTGAGATTTGCTGATGGAAGCATAAGAACATCGGAACTGCGA
CTCAGCATGCAGAAG

ORF - retro_nleu_2643 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.8 %
Parental protein coverage: 63.93 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalGTRGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPEEDHVYLQL
GTRGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVS.SMTLEIR.GRGCGPEEDHVYLQL
RetrocopyGTRGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSQSMTLEIRKGRGCGPEEDHVYLQL
ParentalHHLPPEQLATRLRGISETAVIFIGVDVMKEPIPVLPTVHYNMDGIPTSYKGQVLRHVNGQDQIVPGLYTC
HHLPPEQLATRLRGISETAVIF.GVDV.KEPIPVLPTVHYNMDGIPTSYKGQVLRHVNG.DQIVPGLYTC
RetrocopyHHLPPEQLATRLRGISETAVIFTGVDVTKEPIPVLPTVHYNMDGIPTSYKGQVLRHVNG*DQIVPGLYTC
ParentalGEAACASVHGANRLGANSLLDLVV-GQACALSIEKSCRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRT
GEAACASVHGANRLG.NSLLDLVV.GQACALSIEKSCRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRT
RetrocopyGEAACASVHGANRLGTNSLLDLVV>GQACALSIEKSCRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRT
ParentalSELRLSMQK
SELRLSMQK
RetrocopySELRLSMQK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2643 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species Parental gene accession Retrocopies number
Nomascus leucogenys ENSNLEG00000001292 1 retrocopy
retro_nleu_2643 ,
Ornithorhynchus anatinus ENSOANG000000101571 retrocopy
Xenopus tropicalis ENSXETG000000234081 retrocopy
Drosophila melanogaster FBgn02614391 retrocopy



Copyright © RetrogeneDB 2014-2017