RetrogeneDB ID:

retro_nleu_2677

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397395.1:3479605..3480426(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FOXN3
Ensembl ID:ENSNLEG00000016989
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2677
ATGGGTCCCGTCATGCCTCCCATTAAGATGCTAGAAAGCTCAGGAGTTAGTGTCTCCAGTGGACTGAGTCAGTGTTACTG
GGGCAGCGGTTTCTCCAAGGCCGTTTGGGAAGACGATGACCTCGACTTTTCTCTGCCTGACATCCTATTGAAAGAGGGGA
CCATGGAAGATGAAGAGCTGACCAACCTCAGCTGGCTGCATGAGAGCAAGAACTTGCTGAAGAGCTTTGGAGAGTCGATC
CTCAAGAGTGTCAGCCCGGTCCAGGGCCTGGACGATGACGGCCCCTGTCCCCACCCACTCTGATATGCCCTACGATGCCA
GGCAGAACCCCAACTGCAACCCCCCCTTACTCCTTTAGCTGCCTCATATTTATGGCCATCAAGGACTCTCCAACCAAGCG
CCTGCCAGTGAAAGATATTTACAACTGGATCTTGAAACATTTTCCATATGTTGCAAATGCACCTACTGGGTGGAAATACT
CAGTGAGACACAATTTGTCGTTGAATAAGGATTTTAAGAAAGTGAACAAAGAGAGGAGTCAGAGTATTGGGAAAGGGTCG
TTGTGGTGCATAGACCCAGAGTATAGACAAAATCTAACTCAGGCTTTGAAAAAGACACCTTATCACCCACACCCACACCC
ACACGTGTTCAATACACCTCCCACCTGTCCTCAGGCATATCAAAGCACATCAGGTCTACCCGTCTGGCCGGGCAGTACCT
TCTTCAAGAGAAATGGAGCCCTTCTCCAAGATCCTGACATTGATGCTACCAGGGCCATGGGACTCCCCATGAGATACACT
CCAGGAGTGATACAAAATGGA

ORF - retro_nleu_2677 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.97 %
Parental protein coverage: 55.1 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMGPVMPPSKKPESSGISVSSGLSQCYRGSGFSKALQEDDDLDFSLPDIRLEEGAMEDEELTNLNWLHESK
MGPVMPP.K..ESSG.SVSSGLSQCY.GSGFSKA..EDDDLDFSLPDI.L.EG.MEDEELTNL.WLHESK
RetrocopyMGPVMPPIKMLESSGVSVSSGLSQCYWGSGFSKAVWEDDDLDFSLPDILLKEGTMEDEELTNLSWLHESK
ParentalNLLKSFGESVLRSVSPVQDLDDD-TPPSPAHSDMPYDARQNPNCKPP-YSFSCLIFMAIEDSPTKRLPVK
NLLKSFGES.L.SVSPVQ.L.DD.T.P.P.HSDMPYDARQNPNC.PP.YSFSCLIFMAI.DSPTKRLPVK
RetrocopyNLLKSFGESILKSVSPVQGL-DD>TAPVPTHSDMPYDARQNPNCNPP>YSFSCLIFMAIKDSPTKRLPVK
ParentalDIYNWILEHFPYFANAPTGWKNSVRHNLSLNKCFKKVDKERSQSIGKGSLWCIDPEYRQNLIQALKKTPY
DIYNWIL.HFPY.ANAPTGWK.SVRHNLSLNK.FKKV.KERSQSIGKGSLWCIDPEYRQNL.QALKKTPY
RetrocopyDIYNWILKHFPYVANAPTGWKYSVRHNLSLNKDFKKVNKERSQSIGKGSLWCIDPEYRQNLTQALKKTPY
Parental--HPHPHVFNTPPTCPQAYQSTSGPPIWPGSTFFKRNGALLQDPDIDAASAMML--LNTPPEIQAG
.......VFNTPPTCPQAYQSTSG.P.WPGSTFFKRNGALLQDPDIDA..AM.L....TP..IQ.G
RetrocopyXXXXXXXVFNTPPTCPQAYQSTSGLPVWPGSTFFKRNGALLQDPDIDATRAMGLPMRYTPGVIQNG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2677 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000176201 retrocopy
Nomascus leucogenys ENSNLEG00000016989 1 retrocopy
retro_nleu_2677 ,



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