>retro_nleu_2677
ATGGGTCCCGTCATGCCTCCCATTAAGATGCTAGAAAGCTCAGGAGTTAGTGTCTCCAGTGGACTGAGTCAGTGTTACTG
GGGCAGCGGTTTCTCCAAGGCCGTTTGGGAAGACGATGACCTCGACTTTTCTCTGCCTGACATCCTATTGAAAGAGGGGA
CCATGGAAGATGAAGAGCTGACCAACCTCAGCTGGCTGCATGAGAGCAAGAACTTGCTGAAGAGCTTTGGAGAGTCGATC
CTCAAGAGTGTCAGCCCGGTCCAGGGCCTGGACGATGACGGCCCCTGTCCCCACCCACTCTGATATGCCCTACGATGCCA
GGCAGAACCCCAACTGCAACCCCCCCTTACTCCTTTAGCTGCCTCATATTTATGGCCATCAAGGACTCTCCAACCAAGCG
CCTGCCAGTGAAAGATATTTACAACTGGATCTTGAAACATTTTCCATATGTTGCAAATGCACCTACTGGGTGGAAATACT
CAGTGAGACACAATTTGTCGTTGAATAAGGATTTTAAGAAAGTGAACAAAGAGAGGAGTCAGAGTATTGGGAAAGGGTCG
TTGTGGTGCATAGACCCAGAGTATAGACAAAATCTAACTCAGGCTTTGAAAAAGACACCTTATCACCCACACCCACACCC
ACACGTGTTCAATACACCTCCCACCTGTCCTCAGGCATATCAAAGCACATCAGGTCTACCCGTCTGGCCGGGCAGTACCT
TCTTCAAGAGAAATGGAGCCCTTCTCCAAGATCCTGACATTGATGCTACCAGGGCCATGGGACTCCCCATGAGATACACT
CCAGGAGTGATACAAAATGGA
ORF - retro_nleu_2677 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.97 % |
Parental protein coverage: |
55.1 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MGPVMPPSKKPESSGISVSSGLSQCYRGSGFSKALQEDDDLDFSLPDIRLEEGAMEDEELTNLNWLHESK |
| MGPVMPP.K..ESSG.SVSSGLSQCY.GSGFSKA..EDDDLDFSLPDI.L.EG.MEDEELTNL.WLHESK |
Retrocopy | MGPVMPPIKMLESSGVSVSSGLSQCYWGSGFSKAVWEDDDLDFSLPDILLKEGTMEDEELTNLSWLHESK |
|
Parental | NLLKSFGESVLRSVSPVQDLDDD-TPPSPAHSDMPYDARQNPNCKPP-YSFSCLIFMAIEDSPTKRLPVK |
| NLLKSFGES.L.SVSPVQ.L.DD.T.P.P.HSDMPYDARQNPNC.PP.YSFSCLIFMAI.DSPTKRLPVK |
Retrocopy | NLLKSFGESILKSVSPVQGL-DD>TAPVPTHSDMPYDARQNPNCNPP>YSFSCLIFMAIKDSPTKRLPVK |
|
Parental | DIYNWILEHFPYFANAPTGWKNSVRHNLSLNKCFKKVDKERSQSIGKGSLWCIDPEYRQNLIQALKKTPY |
| DIYNWIL.HFPY.ANAPTGWK.SVRHNLSLNK.FKKV.KERSQSIGKGSLWCIDPEYRQNL.QALKKTPY |
Retrocopy | DIYNWILKHFPYVANAPTGWKYSVRHNLSLNKDFKKVNKERSQSIGKGSLWCIDPEYRQNLTQALKKTPY |
|
Parental | --HPHPHVFNTPPTCPQAYQSTSGPPIWPGSTFFKRNGALLQDPDIDAASAMML--LNTPPEIQAG |
| .......VFNTPPTCPQAYQSTSG.P.WPGSTFFKRNGALLQDPDIDA..AM.L....TP..IQ.G |
Retrocopy | XXXXXXXVFNTPPTCPQAYQSTSGLPVWPGSTFFKRNGALLQDPDIDATRAMGLPMRYTPGVIQNG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2677 was not experimentally validated.
Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.