RetrogeneDB ID: retro_nleu_2846

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397450.1:1698249..1698474(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENSG00000185751
• Ensembl ID: ENSNLEG00000008241
• Aliases: None
• Description: None

Sequence

>retro_nleu_2846
ATGAGTTGGCAAGGAAGATCAGCAGGTAGGCTTAGACCAAGACGGTATCTGCAGCCTCCTGAGCTAACTGGGCCTGTGCT
TGAGCCCAGTGATGAACAGCCTCAACGAGAGGAACCACCACCTGAAAGTCGGGGTCCTACACCTGGCCAGGAGAGAGAGG
AAGATCACGGTGCCGCTGAGATTCTTGTGCTTGACCAGGAAGCTGATCTCCGGGAGCTGTCTCAA

Alignment

ORF - retro_nleu_2846 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.0 %
• Parental protein coverage: 67.57 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSWRGRSTYRPRPRRSLQPPELIGAMLEPSGEEPKEEKPPTKSRDPTPDQKREDDQGAAEIQVPDLETDL
          MSW.GRS..R.RPRR.LQPPEL.G..LEPS.E.P..E.PP..SR.PTP.Q.RE.D.GAAEI.V.D.E.DL
Retrocopy MSWQGRSAGRLRPRRYLQPPELTGPVLEPSDEQPQREEPPPESRGPTPGQEREEDHGAAEILVLDQEADL

Parental  QDLCQ
          ..L.Q
Retrocopy RELSQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2846 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000001349	1 retrocopy	retro_cjac_2302,
Nomascus leucogenys	ENSNLEG00000008241	1 retrocopy	retro_nleu_2846 ,