RetrogeneDB ID: retro_nleu_291

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397262.1:52960216..52960379(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSNLEG00000008396
• Aliases: None
• Description: None

Sequence

>retro_nleu_291
AAATTTTAAAAATTAGCCAGGCTTGGTGGCACATGCCTGTAGTCCCAGCTACTTGGGAGACTGAGGTGGGAAGATGGCTT
GAGCCCCAGGGCAGAGGTTCAGTGTGCCGAGATCATGCCACTGCACTCCAGCCTGGGCAACAAAGTGAGACCCCGTCTCA
AAG

Alignment

ORF - retro_nleu_291 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.65 %
• Parental protein coverage: 57.89 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  KIQKLAGCGGACLRTQILGRLRQENHLN-PGGGGC-SERRSRHCTPAWATEQDSVSK
          K..KLA..GG.CL..Q.LGRLR.E..L..P.G.G..S..RS.HCTPAWAT..D.VSK
Retrocopy KF*KLARLGGTCL*SQLLGRLRWEDGLS<PQGRGS<SVPRSCHCTPAWATK*DPVSK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_291 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Nomascus leucogenys	ENSNLEG00000008396	1 retrocopy	retro_nleu_291 ,