RetrogeneDB ID:

retro_nleu_2986

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397545.1:646736..648395(-)
Located in intron of:ENSNLEG00000015707
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ANKS6
Ensembl ID:ENSNLEG00000017015
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2986
GCGACGCCGGAGCAGCTGGCTGTGGTGCAGCTGCTGGTGGAGAGGCACGCGGATATTGACAAGCAGGACAGCGTGCATGG
CTGGACGGTCCTCATGAAGGCAACCTACCATGGGAATAAGGAAATTGTCAAATATCTGCTAAACCAAGGGGCCGATGTCA
CTCTTCGTGCAAAAAATGGATACATGGCCTTTGACCTGGTGATGCTGCTGAATGATTCCGACACGGAACTTGTTCGACTG
CTGGCATCTGCCTGCATGCAGGTGAATAAAGACAAAGGCCGGCCGAGCCACCAGCCGCCCCTGCCCCACTCGAAGGTCTG
ACAGCCCTGGAGCATCCCAGTGCTGCCCAATGATAAGGGCGGGCTGAAGTCCTGGTGGAACCGAATGTCCAATCTGTTCC
GAAAGCTCAAACTGATGCAGACGCTGCCACGTGGGCTGTCCAGCAACCAGCCTTTGCCTTTCTCTGACGAGCCTGAGCCA
GCTCTGGACTCCACAATGAGGGCTGCCCCCCAGGACAAGACAAGCCGCTCTGCACTCCCTGATGCAGCCCCTGTGACCAA
AGACAATGGTCCTGGGAGCACAAGCGGAGAAAAGGAAGACACGTTATTGACAACCATGCTTCGAAACGGAGCCCCCCTCA
CCAGACTCCCGAGTGACAAGCTGAAAGCAGTCATCCCCCCATTCCTACCCCCTTCCAGTTTTGAGCTGTGGAGCTCTGAT
CGGTCCCCGATGCATCACAACGGGAAGGCAGACCCCATGAAGACTGTACTGCCCCAGAGAGCCAGCAGGGGCCACCCTGT
GGGCGGCGGGGGCACAGACACTACACTCATCAGGCCTGTTAAATTTCCAAGCCTCTCCAGAAGCCCAGCCTCTGTTGCCA
ATTCTGGAAACTTCAACCACTCGTCTCATTCATCGGGCGGCTCCAGTGGGGTAGGAGGTGTGAGCCGGCACGGTGGGGAG
CTGCTTAACCGTTCAGGTGGCAGCATAGACAACGTCTTATCCCAAATCGCTGCCCAGAGGAAAAAAGCAGCCGGATTATC
GGAGCAGAAACCCAGCCATCGGTCAAGCCCTGTGGGGCCAGCACCGGGGTCCAGCCCTTCTGAGCTTCCAGCCTCTGCTG
CAGGTGGCAGCGTTCCTGTTGGCACGAAATTGGAGACCAGCAAAAGGCCTCCGTCTGGAACTTCCACTACCTCCAAGAGC
ACCTCTCCAACCTTCACGCCCTCCCCCTCACCCAAAGGGCACACTGCAGAGTCCTCAGTGTCTTCCTCGTCATCGCATCA
GCAGTCCAAGAGCAGTGGGGGCTCCAGCAGTGGCACCATCACAGATGAGGATGAACTGACTGGAATCCTTAAGAAATTAT
CACTTGAGAAATATCAGCCCATTTTTGAGGAACAAGAGGTGGACATGGAAGCATTCCTTACGCTGACTGACGGTGACTTG
AAGGAGCTGGGAATTAAGACAGATGGGTCCAGGCAGCAGATTCTGGCAGCGATTTCTGAGCTCAACGCAGGCAAGGGACG
CGAGAGACAAATTTTACAGGAAACCATTCACAACTTTCACTCTTCCTTTGAAAGCAGTGCCAGCAACACCAGGGCCCCTG
GCAGCAGCCCCTCCTTGGCTGGGTGGGTGAGGCCAGAAGAAACTGCCTCCGGCAAGAGG

ORF - retro_nleu_2986 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.76 %
Parental protein coverage: 80.38 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAVTGQLALVQLLVERHADIDKQDSVHGWTALMQATYHGNKEIVKYLLNQGADVTLRAKNGYTAFDLVMLL
A...QLA.VQLLVERHADIDKQDSVHGWT.LM.ATYHGNKEIVKYLLNQGADVTLRAKNGY.AFDLVMLL
RetrocopyATPEQLAVVQLLVERHADIDKQDSVHGWTVLMKATYHGNKEIVKYLLNQGADVTLRAKNGYMAFDLVMLL
ParentalNDPDTELVRLLASVCMQVNKDKGRPSHQPPLPHSKGRQPWSIPVLPDDKGGLKSWWNRMSNRFRKLKLMQ
ND.DTELVRLLAS.CMQVNKDKGRPSHQPPLPHSK..QPWSIPVLP.DKGGLKSWWNRMSN.FRKLKLMQ
RetrocopyNDSDTELVRLLASACMQVNKDKGRPSHQPPLPHSKV*QPWSIPVLPNDKGGLKSWWNRMSNLFRKLKLMQ
ParentalTLPRGLSSNQPLPFSDDPEPALDSTMRAAPQDKISRSALPDAAPVTKDNGPGSTRGEKEDTLLTTMLRNG
TLPRGLSSNQPLPFSD.PEPALDSTMRAAPQDK.SRSALPDAAPVTKDNGPGST.GEKEDTLLTTMLRNG
RetrocopyTLPRGLSSNQPLPFSDEPEPALDSTMRAAPQDKTSRSALPDAAPVTKDNGPGSTSGEKEDTLLTTMLRNG
ParentalAPLTRLPSDKLKAVIPPFLPPSSFELWSSDRSRRRHNGKADPMKTVLPQRASRGHPVGGGGTDTTPVRPV
APLTRLPSDKLKAVIPPFLPPSSFELWSSDRS...HNGKADPMKTVLPQRASRGHPVGGGGTDTT..RPV
RetrocopyAPLTRLPSDKLKAVIPPFLPPSSFELWSSDRSPMHHNGKADPMKTVLPQRASRGHPVGGGGTDTTLIRPV
ParentalKFPSLSRSPASPANSGNFNHSPHSSGGSSGVGGVSRHGGELLNRSGGSIDNVLSQIAAQRKKAAGLSEQK
KFPSLSRSPAS.ANSGNFNHS.HSSGGSSGVGGVSRHGGELLNRSGGSIDNVLSQIAAQRKKAAGLSEQK
RetrocopyKFPSLSRSPASVANSGNFNHSSHSSGGSSGVGGVSRHGGELLNRSGGSIDNVLSQIAAQRKKAAGLSEQK
ParentalPSHRSSPVGPAPGSSPSELPASPAGGSVPVGKKLETSKRPPSGTSTTSKSTSPTLTPSPSPKGHTAESSV
PSHRSSPVGPAPGSSPSELPAS.AGGSVPVG.KLETSKRPPSGTSTTSKSTSPT.TPSPSPKGHTAESSV
RetrocopyPSHRSSPVGPAPGSSPSELPASAAGGSVPVGTKLETSKRPPSGTSTTSKSTSPTFTPSPSPKGHTAESSV
ParentalSSSSSHRQSKSSGGSSSGTITDEDELTGILKKLSLEKYQPIFEEQEVDMEAFLTLTDGDLKELGIKTDGS
SSSSSH.QSKSSGGSSSGTITDEDELTGILKKLSLEKYQPIFEEQEVDMEAFLTLTDGDLKELGIKTDGS
RetrocopySSSSSHQQSKSSGGSSSGTITDEDELTGILKKLSLEKYQPIFEEQEVDMEAFLTLTDGDLKELGIKTDGS
ParentalRQQILAAISELNAGKGRERQILQETIHNFHSSFESSASNTRAPGNSPSMAGWVRPEETASGKR
RQQILAAISELNAGKGRERQILQETIHNFHSSFESSASNTRAPG.SPS.AGWVRPEETASGKR
RetrocopyRQQILAAISELNAGKGRERQILQETIHNFHSSFESSASNTRAPGSSPSLAGWVRPEETASGKR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2986 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Nomascus leucogenys ENSNLEG00000017015 1 retrocopy
retro_nleu_2986 ,



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