>retro_nleu_2986
GCGACGCCGGAGCAGCTGGCTGTGGTGCAGCTGCTGGTGGAGAGGCACGCGGATATTGACAAGCAGGACAGCGTGCATGG
CTGGACGGTCCTCATGAAGGCAACCTACCATGGGAATAAGGAAATTGTCAAATATCTGCTAAACCAAGGGGCCGATGTCA
CTCTTCGTGCAAAAAATGGATACATGGCCTTTGACCTGGTGATGCTGCTGAATGATTCCGACACGGAACTTGTTCGACTG
CTGGCATCTGCCTGCATGCAGGTGAATAAAGACAAAGGCCGGCCGAGCCACCAGCCGCCCCTGCCCCACTCGAAGGTCTG
ACAGCCCTGGAGCATCCCAGTGCTGCCCAATGATAAGGGCGGGCTGAAGTCCTGGTGGAACCGAATGTCCAATCTGTTCC
GAAAGCTCAAACTGATGCAGACGCTGCCACGTGGGCTGTCCAGCAACCAGCCTTTGCCTTTCTCTGACGAGCCTGAGCCA
GCTCTGGACTCCACAATGAGGGCTGCCCCCCAGGACAAGACAAGCCGCTCTGCACTCCCTGATGCAGCCCCTGTGACCAA
AGACAATGGTCCTGGGAGCACAAGCGGAGAAAAGGAAGACACGTTATTGACAACCATGCTTCGAAACGGAGCCCCCCTCA
CCAGACTCCCGAGTGACAAGCTGAAAGCAGTCATCCCCCCATTCCTACCCCCTTCCAGTTTTGAGCTGTGGAGCTCTGAT
CGGTCCCCGATGCATCACAACGGGAAGGCAGACCCCATGAAGACTGTACTGCCCCAGAGAGCCAGCAGGGGCCACCCTGT
GGGCGGCGGGGGCACAGACACTACACTCATCAGGCCTGTTAAATTTCCAAGCCTCTCCAGAAGCCCAGCCTCTGTTGCCA
ATTCTGGAAACTTCAACCACTCGTCTCATTCATCGGGCGGCTCCAGTGGGGTAGGAGGTGTGAGCCGGCACGGTGGGGAG
CTGCTTAACCGTTCAGGTGGCAGCATAGACAACGTCTTATCCCAAATCGCTGCCCAGAGGAAAAAAGCAGCCGGATTATC
GGAGCAGAAACCCAGCCATCGGTCAAGCCCTGTGGGGCCAGCACCGGGGTCCAGCCCTTCTGAGCTTCCAGCCTCTGCTG
CAGGTGGCAGCGTTCCTGTTGGCACGAAATTGGAGACCAGCAAAAGGCCTCCGTCTGGAACTTCCACTACCTCCAAGAGC
ACCTCTCCAACCTTCACGCCCTCCCCCTCACCCAAAGGGCACACTGCAGAGTCCTCAGTGTCTTCCTCGTCATCGCATCA
GCAGTCCAAGAGCAGTGGGGGCTCCAGCAGTGGCACCATCACAGATGAGGATGAACTGACTGGAATCCTTAAGAAATTAT
CACTTGAGAAATATCAGCCCATTTTTGAGGAACAAGAGGTGGACATGGAAGCATTCCTTACGCTGACTGACGGTGACTTG
AAGGAGCTGGGAATTAAGACAGATGGGTCCAGGCAGCAGATTCTGGCAGCGATTTCTGAGCTCAACGCAGGCAAGGGACG
CGAGAGACAAATTTTACAGGAAACCATTCACAACTTTCACTCTTCCTTTGAAAGCAGTGCCAGCAACACCAGGGCCCCTG
GCAGCAGCCCCTCCTTGGCTGGGTGGGTGAGGCCAGAAGAAACTGCCTCCGGCAAGAGG
ORF - retro_nleu_2986 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
94.76 % |
Parental protein coverage: |
80.38 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | AVTGQLALVQLLVERHADIDKQDSVHGWTALMQATYHGNKEIVKYLLNQGADVTLRAKNGYTAFDLVMLL |
| A...QLA.VQLLVERHADIDKQDSVHGWT.LM.ATYHGNKEIVKYLLNQGADVTLRAKNGY.AFDLVMLL |
Retrocopy | ATPEQLAVVQLLVERHADIDKQDSVHGWTVLMKATYHGNKEIVKYLLNQGADVTLRAKNGYMAFDLVMLL |
|
Parental | NDPDTELVRLLASVCMQVNKDKGRPSHQPPLPHSKGRQPWSIPVLPDDKGGLKSWWNRMSNRFRKLKLMQ |
| ND.DTELVRLLAS.CMQVNKDKGRPSHQPPLPHSK..QPWSIPVLP.DKGGLKSWWNRMSN.FRKLKLMQ |
Retrocopy | NDSDTELVRLLASACMQVNKDKGRPSHQPPLPHSKV*QPWSIPVLPNDKGGLKSWWNRMSNLFRKLKLMQ |
|
Parental | TLPRGLSSNQPLPFSDDPEPALDSTMRAAPQDKISRSALPDAAPVTKDNGPGSTRGEKEDTLLTTMLRNG |
| TLPRGLSSNQPLPFSD.PEPALDSTMRAAPQDK.SRSALPDAAPVTKDNGPGST.GEKEDTLLTTMLRNG |
Retrocopy | TLPRGLSSNQPLPFSDEPEPALDSTMRAAPQDKTSRSALPDAAPVTKDNGPGSTSGEKEDTLLTTMLRNG |
|
Parental | APLTRLPSDKLKAVIPPFLPPSSFELWSSDRSRRRHNGKADPMKTVLPQRASRGHPVGGGGTDTTPVRPV |
| APLTRLPSDKLKAVIPPFLPPSSFELWSSDRS...HNGKADPMKTVLPQRASRGHPVGGGGTDTT..RPV |
Retrocopy | APLTRLPSDKLKAVIPPFLPPSSFELWSSDRSPMHHNGKADPMKTVLPQRASRGHPVGGGGTDTTLIRPV |
|
Parental | KFPSLSRSPASPANSGNFNHSPHSSGGSSGVGGVSRHGGELLNRSGGSIDNVLSQIAAQRKKAAGLSEQK |
| KFPSLSRSPAS.ANSGNFNHS.HSSGGSSGVGGVSRHGGELLNRSGGSIDNVLSQIAAQRKKAAGLSEQK |
Retrocopy | KFPSLSRSPASVANSGNFNHSSHSSGGSSGVGGVSRHGGELLNRSGGSIDNVLSQIAAQRKKAAGLSEQK |
|
Parental | PSHRSSPVGPAPGSSPSELPASPAGGSVPVGKKLETSKRPPSGTSTTSKSTSPTLTPSPSPKGHTAESSV |
| PSHRSSPVGPAPGSSPSELPAS.AGGSVPVG.KLETSKRPPSGTSTTSKSTSPT.TPSPSPKGHTAESSV |
Retrocopy | PSHRSSPVGPAPGSSPSELPASAAGGSVPVGTKLETSKRPPSGTSTTSKSTSPTFTPSPSPKGHTAESSV |
|
Parental | SSSSSHRQSKSSGGSSSGTITDEDELTGILKKLSLEKYQPIFEEQEVDMEAFLTLTDGDLKELGIKTDGS |
| SSSSSH.QSKSSGGSSSGTITDEDELTGILKKLSLEKYQPIFEEQEVDMEAFLTLTDGDLKELGIKTDGS |
Retrocopy | SSSSSHQQSKSSGGSSSGTITDEDELTGILKKLSLEKYQPIFEEQEVDMEAFLTLTDGDLKELGIKTDGS |
|
Parental | RQQILAAISELNAGKGRERQILQETIHNFHSSFESSASNTRAPGNSPSMAGWVRPEETASGKR |
| RQQILAAISELNAGKGRERQILQETIHNFHSSFESSASNTRAPG.SPS.AGWVRPEETASGKR |
Retrocopy | RQQILAAISELNAGKGRERQILQETIHNFHSSFESSASNTRAPGSSPSLAGWVRPEETASGKR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2986 was not experimentally validated.
Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.