RetrogeneDB ID: retro_nleu_507

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397266.1:5626271..5626837(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NUDT19
• Ensembl ID: ENSNLEG00000007633
• Aliases: None
• Description: None

Sequence

>retro_nleu_507
TTGGCCCAGGGCCGCCCCAACTGGCCTACGCCAGGGCCTGGCCTTGCCCTCAAGCTGCCTAGGGGCCTCGCTGCCTGGCA
ACCCCAGCCTGCCTGCACCGGGACCCGCGCCCCTTCCTGTGGCTGTGCCTGCACCTTGACTGCACGCCCGACATCTGGGC
ACTGCAGGAGGGGAGTGCCTGGCTCACACCTTTCATGCACGCTGCCACTCATCACTCCCACACGGCCTCCTTACTGCGTT
GCCTCCTCGAGCAGCTGTCGGTTTACCCTGACTTGGCCAAGGTGGTGGGCTGCCAGTGGTCATCTCTGTCAGTTGCAGCT
GAGAGTTTCTTATCAAAAGAAATGTGGTTGGCATCCCCACAGTTCTATGAAATAAGAAGACTTGAAAACTTGGCCTCTCT
CCCTGACTTGCACAAATTGTGGTTGGATGGTACATTAGAAGGATGGAAAAGATGGCTGCCCATCACCTTGTTAACTGCTG
ATAGGAAGGTCCAGCTTTTTCCAGTTGATGAGCTACACTTGGAAGATTCAGACTTTTTAGAAAATCTTTTTTCTACTGAA
AAGAAA

Alignment

ORF - retro_nleu_507 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.63 %
• Parental protein coverage: 50.4 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LLRPRTSPPGPAPGPGLALEPP-PGLAAWRARVRRDPRHFLRLCAHLDCTPDIWALHNWSAWLTPFLRGT
          L...R...P.P.PG..L.L....P...A..A...RDPR.FL.LC.HLDCTPDIWAL...SAWLTPF....
Retrocopy LAQGRPNWPTPGPGLALKLPRG<PRCLATPACLHRDPRPFLWLCLHLDCTPDIWALQEGSAWLTPFMHAA

Parental  TRRFETAFFLCCLREPPPVYPDLAEVVGYQWSSPSEATESFLSKEIWLPPPQFYEVRRLANFASLSDLHK
          T....TA..L.CL.E...VYPDLA.VVG.QWSS.S.A.ESFLSKE.WL..PQFYE.RRL.N.ASL.DLHK
Retrocopy THHSHTASLLRCLLEQLSVYPDLAKVVGCQWSSLSVAAESFLSKEMWLASPQFYEIRRLENLASLPDLHK

Parental  FCLGRALEGLERWLPIILLTADGMVHLLPGDELYLEDSDFLENLMSTEKK
          ..L...LEG..RWLPI.LLTAD..V.L.P.DEL.LEDSDFLENL.STEKK
Retrocopy LWLDGTLEGWKRWLPITLLTADRKVQLFPVDELHLEDSDFLENLFSTEKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_507 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Loxodonta africana	ENSLAFG00000032048	1 retrocopy	retro_lafr_833,
Nomascus leucogenys	ENSNLEG00000007633	1 retrocopy	retro_nleu_507 ,