RetrogeneDB ID: retro_nleu_581

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397267.1:33513404..33514234(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZNF532
• Ensembl ID: ENSNLEG00000008341
• Aliases: None
• Description: None

Sequence

>retro_nleu_581
TCAATGGAAACCAAGAAAGTGGCCAGTCCTGGGTGGAGGTGTTGGGAGTGTGACCGCCTGTTCACGCAGAGAGATGTGCA
CATGTCCCACATGAGGAAGGAGTACGGGAAGCAAATGAAGAAACACCCCTGCCCCAGTGTGACAAGTCTTTCAGCTCGTC
CCACAGCCTGTGCCGGCACAACCAGATCAAGCACAAAGGCATCAGGCACTGCCCAGACTCCAGACGTACCTTTACGAAAC
GATTGGTGCTGGAGAAGCACGTCCAGCTGATGCATGGCATCAAGGACACTGACCTGAAAGAAATGACAGATGCCACCCAT
GAGGAGGAAACAGCAATAAAAGAAGACACCAAGGTCCCCAGTCCCAAGCGGAAGTTGGAAGAACCAGTTCTGGAGTTCAG
GCCTCGCCAAGGAGCAATGACTCAACCACTGAAAAAGCTGAAAATCAATGTTTTTAAGGTTCACAAGTGTGCCGTGTGTG
GCTTCACCACCGAAAACCTGCTGCAGTTCCACGAACACATCCCTCGGCACAAATCAGATGGTTCTTCCTACCAGTGCCGG
GAGTGTGGCCTCTGCTACACGTCTCACGTCTCTCTATCCAGGCACCTCTTCATCGTACACAAGTTAAAGGAACCTCAGCC
AGTGTCCAAGCAAAATGGGGCTGGGGAAGATAAACAACAGGAGAACAAACCCAGCCATGAGGGTGAATCCCCCAATGGCA
CCGTGTCAGACAGAAAGTGCAAAGTGTGAGCAAAAACTTTTGAAACTGAAGCTGCCTGAAATACAGACACAGGGCATGGC
CTTCATCAAATCCAAAAGGATGAGCTCAGC

Alignment

ORF - retro_nleu_581 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.48 %
• Parental protein coverage: 55.12 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SMETKKVASPGWTCWECDRLFMQRDVYISHVRKEHGKQMKKHPCR-QCDKSFSSSHSLCRHNRIKHKGIR
          SMETKKVASPGW.CWECDRLF.QRDV..SH.RKE.GKQMKKHPC..QCDKSFSSSHSLCRHN.IKHKGIR
Retrocopy SMETKKVASPGWRCWECDRLFTQRDVHMSHMRKEYGKQMKKHPCP<QCDKSFSSSHSLCRHNQIKHKGIR

Parental  KVHCPDSRRTFTKRLMLEKHVQLMHGIKDPDLKEMTDATNAEETEIKEDTKVPSPKRKLEEPVLEFRPPR
          ..HCPDSRRTFTKRL.LEKHVQLMHGIKD.DLKEMTDAT..EET.IKEDTKVPSPKRKLEEPVLEFRP..
Retrocopy --HCPDSRRTFTKRLVLEKHVQLMHGIKDTDLKEMTDATHEEETAIKEDTKVPSPKRKLEEPVLEFRPRQ

Parental  GAITQPLKKLKINVFKVHKCAVCGFTTENLLQFHEHIPQHKSDGSSYQCRECGLCYTSHVSLSRHLFIVH
          GA.TQPLKKLKINVFKVHKCAVCGFTTENLLQFHEHIP.HKSDGSSYQCRECGLCYTSHVSLSRHLFIVH
Retrocopy GAMTQPLKKLKINVFKVHKCAVCGFTTENLLQFHEHIPRHKSDGSSYQCRECGLCYTSHVSLSRHLFIVH

Parental  KLKEPQPVSKQNGAGEDNQQENKPSHEDESPDGAVSDRKCKVCAKTFETEAALNTHMRTHGMAFIKSKRM
          KLKEPQPVSKQNGAGED.QQENKPSHE.ESP.G.VSDRKCKV.AKTFETEAA.NT....HG...I.....
Retrocopy KLKEPQPVSKQNGAGEDKQQENKPSHEGESPNGTVSDRKCKV*AKTFETEAA*NTD-TGHGLHQIQKDEL

Parental  S
          S
Retrocopy S

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_581 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Nomascus leucogenys	ENSNLEG00000008341	2 retrocopies	retro_nleu_3013, retro_nleu_581 ,
Vicugna pacos	ENSVPAG00000008243	2 retrocopies	retro_vpac_454, retro_vpac_635,