RetrogeneDB ID: retro_nleu_634

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397269.1:6683251..6683572(+)
• Located in intron of: ENSNLEG00000003131

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C8ORF46
• Ensembl ID: ENSNLEG00000010728
• Aliases: None
• Description: None

Sequence

>retro_nleu_634
CCCAAAGCATCGAATCTGTATAGGAATCGAACACATGGAAAAATCTTTGATTCCTCCAGTGTCTTGGATCTCAAAGCTCC
AGCCTCAGCCTTGGTGGAGGCAGCAGCCCCGGGCTCAGAGAAGGAAGGTATTCAGATGACAGGATTCAGACATCTCAGGA
TGACCAAAGAGTACCCAACCATTCACCAAGGAGCAGAAGCTTCCCTATCGCTGACAGGCATTACTTCCTGCAGTGTCCCC
AGCATCCCCCAGAAACTGTGGACAAGGCACAAGAAGAAGTCTGAATATGTGAGAGCCACCAACAGTGCCTTTGAGGCAGA
C

Alignment

ORF - retro_nleu_634 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.63 %
• Parental protein coverage: 52.91 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PKTSNLCGNRAYGKSLIPPVPRISVKTSASASLEATAMGTEKGAVLMRGSRHLKKMTEEYPALPQGAEAS
          PK.SNL..NR..GK...........K..ASA..EA.A.G.EK....M.G.RHL..MT.EYP...QGAEAS
Retrocopy PKASNLYRNRTHGK-IFDSSSVLDLKAPASALVEAAAPGSEKEGIQMTGFRHLR-MTKEYPTIHQGAEAS

Parental  LPLTGSASCGVPGILRKMWTRHKKKSEYVGATNSAFEAD
          L.LTG..SC.VP.I..K.WTRHKKKSEYV.ATNSAFEAD
Retrocopy LSLTGITSCSVPSIPQKLWTRHKKKSEYVRATNSAFEAD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_634 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000169085	1 retrocopy	retro_hsap_3937,
Gorilla gorilla	ENSGGOG00000008516	1 retrocopy	retro_ggor_2646,
Macaca mulatta	ENSMMUG00000022419	1 retrocopy	retro_mmul_2280,
Nomascus leucogenys	ENSNLEG00000010728	1 retrocopy	retro_nleu_634 ,
Pongo abelii	ENSPPYG00000018639	2 retrocopies	retro_pabe_3245, retro_pabe_3378,
Pan troglodytes	ENSPTRG00000020307	1 retrocopy	retro_ptro_2673,
Tupaia belangeri	ENSTBEG00000014906	1 retrocopy	retro_tbel_1795,