RetrogeneDB ID:

retro_nleu_647

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397269.1:29053295..29054160(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSNLEG00000005725
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:STOM
Ensembl ID:ENSNLEG00000017145
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_647
ATGGCCGAGAAGCGGCACACACTGGACTCCGAAGCCCAGCGGCTCCCCAACTCCTTCAAGGACAGCCCCAGTAAGGGCCT
TGGACCTTGCGGATGGATTTTGGTGGCGTTCTCATTCTTATTAACAGTTATAACTTTCCCAGTCTCAATATGGATGTGCA
TAAAGATTATAAAAGAGTATGAAAGAGCCATCATCTTTAGATTGGGTCGCATTTTACAAGGAGGAGCCAAAGGACCTGGT
TTGTTTTTTATTCTGCCATGCACTGACAGCTTCATCAAAGTGGACATGAGAACAATTTCATTTGATATTCCTCCTCAGGA
GATCCTCACAAAGGATTCAGTGACAATTAGCGTGGATGGTGTGGTCTATTAACCGTGTTCAGAATGCAACCCTGGCTGTG
GCAAATATCACCAATGCTGACTCGGTGACCCGTCTTTTGGCACAAACTACTCTGAGGAATGTTCTGGGCAACAAGAACCT
TTCTCAGATCCTCTCTGACAGAGAAGAAATTGCACACAACATGCAGTCTACTCTGGATGATGCCACTGATGCCTGGGGAA
TAAAGGTGGAGCGTGTGGAAATTAAGGATGTGAAACTACCTGTGCAGCTCCAGAGAGCTATGGCTGCAGAAGCAGAAGCG
TCCCGCGAGGCCCGCGCCAAGGTTATTGCAGCCAAAGGAGAAATGAATGCATCCAGGGCTCTGAAAGAAGCCTCCATGGT
CATCACTGAATCTCCTGCAGCCCTTCAGCTCTGGTACCTGCAGACACTGACCACCATTGCTGCTGAGAAAAACTCAACAA
TTGTCTTCCCTCTGCCCATAGATATGCTGCAAGGAATCATAGGGGCAAAACACAGCCATCTAGGC

ORF - retro_nleu_647 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.54 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAEKRHTLDSEAQRLPDSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIKIIKEYERAIIFRLGR
MAEKRHTLDSEAQRLP.SFKDSPSKGLGPCGWILVAFSFL.TVITFP.SIWMCIKIIKEYERAIIFRLGR
RetrocopyMAEKRHTLDSEAQRLPNSFKDSPSKGLGPCGWILVAFSFLLTVITFPVSIWMCIKIIKEYERAIIFRLGR
ParentalILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVY-YRVQNATLAVANITNA
ILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVY..RVQNATLAVANITNA
RetrocopyILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVY>NRVQNATLAVANITNA
ParentalDSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDVKLPVQLQRAMAA
DS.TRLLAQTTLRNVLG.KNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDVKLPVQLQRAMAA
RetrocopyDSVTRLLAQTTLRNVLGNKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDVKLPVQLQRAMAA
ParentalEAEASREARAKVIAAEGEMNASRALKEASIVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGI
EAEASREARAKVIAA.GEMNASRALKEAS.VITESPAALQL.YLQTLTTIAAEKNSTIVFPLPIDMLQGI
RetrocopyEAEASREARAKVIAAKGEMNASRALKEASMVITESPAALQLWYLQTLTTIAAEKNSTIVFPLPIDMLQGI
ParentalIGAKHSHLG
IGAKHSHLG
RetrocopyIGAKHSHLG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_647 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG000000157231 retrocopy
Nomascus leucogenys ENSNLEG00000017145 1 retrocopy
retro_nleu_647 ,
Otolemur garnettii ENSOGAG000000028792 retrocopies
Oreochromis niloticus ENSONIG000000130211 retrocopy



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