RetrogeneDB ID:

retro_nleu_704

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397270.1:12457571..12458573(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSNLEG00000015955
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:LGMN
Ensembl ID:ENSNLEG00000017162
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_704
GATTACACTGCAGAGGATGTTACCCCACAAAATTTCCTTGCTGTGCTGAGAGCCGATGCAGAAGCAGTGAAGGGCATAGG
ATCCGGGAAAGTCCTGAAGAGCAGCCCCCAGGATCGTGTATGTGCTCGTTGACTTCACTGACCATGGATCTACTGGAATA
CTGGTTTTCCCCAATGAAGATCTTCATGTAAAGTACCTGAATGAGACCATCCATTACATATACATACATAAAATGTACCA
AAAGATGGTGTTCTATATTGAAGCCTGTGAGTCTGGGTCCATGATGAACCACCTGCCTGGTGACACTAATGTTTATGCAA
CTACTGCTGCCAACCCCAGAGAGTCGTCCTACACCTGTTACTATGATAAGAAGAGATCGACGTACCTGGGGGACTGGTAC
AGCGTCAACTGGATGGAAGACTCGGACGTGGAAGATCTGACTAACAAGACCCTGCGCAAGCAGTACCACCTGGTAAAATC
ACACACCAATACCAGCCACATCATGCAGTACCGAAATGAAACGATCTCCACCATGAAAGTGATGCAGTTTCAGAGTATGA
AACACAAAGCCAGTTCTCCTATCTCCCTGCCTCCAGTCACACACCTTGACCTCAATCCCCAGCCCTTATGTGCCCCTCAT
GATCATGAAAAGGAAACTGATGAACACCATCGATCTGGAGGACTCCAGGCAGCTCACAGAGGAGATCCAGCGGCATCTGG
ATGCCAGGCACCTCATTGAGAAGGCAGTGCGCAAGATCGCCTCCTTGTGGGCAGCGTCCGAGGCTGAGGTGGAGCACCTC
CTGCCTGAGAGAGCCCCCATTCATGGGGCATAGCTGCTACCTGGAGGCCCCGCTGCACTTCCAGACCCACTGCTTCAACT
GGCACTCCCCCACGTGCGAGTATGCGTTGAGACATTTGTACGTGCTGGCCAACCTGTGTGAGAAACCGTATCCGCTTCAC
AGGATAAAATTGTCCATGGACCACGTGTGCCTTGGTCGCTAC

ORF - retro_nleu_704 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.52 %
Parental protein coverage: 77.03 %
Number of stop codons detected: 0
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalDYTGEDVTPQNFLAVLRGDAEAVRGKGSGKVL-KSGPQD-HVFVYFTDHGSTGILVFPNEDLHVKDLNET
DYT.EDVTPQNFLAVLR.DAEAV.G.GSGKVL....P....V.V.FTDHGSTGILVFPNEDLHVK.LNET
RetrocopyDYTAEDVTPQNFLAVLRADAEAVKGIGSGKVL>RAAPRIVYVLVDFTDHGSTGILVFPNEDLHVKYLNET
ParentalIHYMYKHKMYQKMVFYIEACESGSMMNHLPDNINVYATTAANPRESSYACYYDEKRSTYLGDWYSVNWME
IHY.Y.HKMYQKMVFYIEACESGSMMNHLP...NVYATTAANPRESSY.CYYD.KRSTYLGDWYSVNWME
RetrocopyIHYIYIHKMYQKMVFYIEACESGSMMNHLPGDTNVYATTAANPRESSYTCYYDKKRSTYLGDWYSVNWME
ParentalDSDVEDLTKETLHKQYHLVKSHTNTSHVMQYGNKTISTMKVMQFQGMKHKASSPLSLPPVTHLDLT-PSP
DSDVEDLT..TL.KQYHLVKSHTNTSH.MQY.N.TISTMKVMQFQ.MKHKASSP.SLPPVTHLDL..PSP
RetrocopyDSDVEDLTNKTLRKQYHLVKSHTNTSHIMQYRNETISTMKVMQFQSMKHKASSPISLPPVTHLDLN>PSP
ParentalDVPLTIMKRKLMNTNDLEESRQLTEEIQRHLDARHLIEKSVRKIVSLLAASEAGVEQLLSERAPL-TGHS
.VPL.IMKRKLMNT.DLE.SRQLTEEIQRHLDARHLIEK.VRKI.SL.AASEA.VE.LL.ERAP...GHS
RetrocopyYVPLMIMKRKLMNTIDLEDSRQLTEEIQRHLDARHLIEKAVRKIASLWAASEAEVEHLLPERAPI>MGHS
ParentalCYPEALLHFRTHCFNWHSPTYEYALRYLYVLVNLCEKPYPLHRIKLSMDHVCLGHY
CY.EA.LHF.THCFNWHSPT.EYALR.LYVL.NLCEKPYPLHRIKLSMDHVCLG.Y
RetrocopyCYLEAPLHFQTHCFNWHSPTCEYALRHLYVLANLCEKPYPLHRIKLSMDHVCLGRY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_704 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Gorilla gorilla ENSGGOG000000082561 retrocopy
Nomascus leucogenys ENSNLEG00000017162 1 retrocopy
retro_nleu_704 ,



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