>retro_nleu_704
GATTACACTGCAGAGGATGTTACCCCACAAAATTTCCTTGCTGTGCTGAGAGCCGATGCAGAAGCAGTGAAGGGCATAGG
ATCCGGGAAAGTCCTGAAGAGCAGCCCCCAGGATCGTGTATGTGCTCGTTGACTTCACTGACCATGGATCTACTGGAATA
CTGGTTTTCCCCAATGAAGATCTTCATGTAAAGTACCTGAATGAGACCATCCATTACATATACATACATAAAATGTACCA
AAAGATGGTGTTCTATATTGAAGCCTGTGAGTCTGGGTCCATGATGAACCACCTGCCTGGTGACACTAATGTTTATGCAA
CTACTGCTGCCAACCCCAGAGAGTCGTCCTACACCTGTTACTATGATAAGAAGAGATCGACGTACCTGGGGGACTGGTAC
AGCGTCAACTGGATGGAAGACTCGGACGTGGAAGATCTGACTAACAAGACCCTGCGCAAGCAGTACCACCTGGTAAAATC
ACACACCAATACCAGCCACATCATGCAGTACCGAAATGAAACGATCTCCACCATGAAAGTGATGCAGTTTCAGAGTATGA
AACACAAAGCCAGTTCTCCTATCTCCCTGCCTCCAGTCACACACCTTGACCTCAATCCCCAGCCCTTATGTGCCCCTCAT
GATCATGAAAAGGAAACTGATGAACACCATCGATCTGGAGGACTCCAGGCAGCTCACAGAGGAGATCCAGCGGCATCTGG
ATGCCAGGCACCTCATTGAGAAGGCAGTGCGCAAGATCGCCTCCTTGTGGGCAGCGTCCGAGGCTGAGGTGGAGCACCTC
CTGCCTGAGAGAGCCCCCATTCATGGGGCATAGCTGCTACCTGGAGGCCCCGCTGCACTTCCAGACCCACTGCTTCAACT
GGCACTCCCCCACGTGCGAGTATGCGTTGAGACATTTGTACGTGCTGGCCAACCTGTGTGAGAAACCGTATCCGCTTCAC
AGGATAAAATTGTCCATGGACCACGTGTGCCTTGGTCGCTAC
ORF - retro_nleu_704 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
84.52 % |
Parental protein coverage: |
77.03 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | DYTGEDVTPQNFLAVLRGDAEAVRGKGSGKVL-KSGPQD-HVFVYFTDHGSTGILVFPNEDLHVKDLNET |
| DYT.EDVTPQNFLAVLR.DAEAV.G.GSGKVL....P....V.V.FTDHGSTGILVFPNEDLHVK.LNET |
Retrocopy | DYTAEDVTPQNFLAVLRADAEAVKGIGSGKVL>RAAPRIVYVLVDFTDHGSTGILVFPNEDLHVKYLNET |
|
Parental | IHYMYKHKMYQKMVFYIEACESGSMMNHLPDNINVYATTAANPRESSYACYYDEKRSTYLGDWYSVNWME |
| IHY.Y.HKMYQKMVFYIEACESGSMMNHLP...NVYATTAANPRESSY.CYYD.KRSTYLGDWYSVNWME |
Retrocopy | IHYIYIHKMYQKMVFYIEACESGSMMNHLPGDTNVYATTAANPRESSYTCYYDKKRSTYLGDWYSVNWME |
|
Parental | DSDVEDLTKETLHKQYHLVKSHTNTSHVMQYGNKTISTMKVMQFQGMKHKASSPLSLPPVTHLDLT-PSP |
| DSDVEDLT..TL.KQYHLVKSHTNTSH.MQY.N.TISTMKVMQFQ.MKHKASSP.SLPPVTHLDL..PSP |
Retrocopy | DSDVEDLTNKTLRKQYHLVKSHTNTSHIMQYRNETISTMKVMQFQSMKHKASSPISLPPVTHLDLN>PSP |
|
Parental | DVPLTIMKRKLMNTNDLEESRQLTEEIQRHLDARHLIEKSVRKIVSLLAASEAGVEQLLSERAPL-TGHS |
| .VPL.IMKRKLMNT.DLE.SRQLTEEIQRHLDARHLIEK.VRKI.SL.AASEA.VE.LL.ERAP...GHS |
Retrocopy | YVPLMIMKRKLMNTIDLEDSRQLTEEIQRHLDARHLIEKAVRKIASLWAASEAEVEHLLPERAPI>MGHS |
|
Parental | CYPEALLHFRTHCFNWHSPTYEYALRYLYVLVNLCEKPYPLHRIKLSMDHVCLGHY |
| CY.EA.LHF.THCFNWHSPT.EYALR.LYVL.NLCEKPYPLHRIKLSMDHVCLG.Y |
Retrocopy | CYLEAPLHFQTHCFNWHSPTCEYALRHLYVLANLCEKPYPLHRIKLSMDHVCLGRY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_704 was not experimentally validated.
Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.