RetrogeneDB ID: retro_nleu_864

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397275.1:18979127..18981187(+)
• Located in intron of: ENSNLEG00000014925

Retrocopy information

• Ensembl ID: ENSNLEG00000014932
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: EPS15
• Ensembl ID: ENSNLEG00000016192
• Aliases: None
• Description: None

Sequence

>retro_nleu_864
TCAAGTGGGAATCCTGTATATGAAAAATACTATAGACAGGTTGATACAGGCAATACTGGAAGGATGTTGGCTTCTGATGC
TGCTGCTCTTCTGAAAAAATCAGGGCTTCCAGACTTGATACTTGAGAAGATTTGGGATTTAGCCGACACAGATGGCAAAG
GTATCCTGAACAAACAAGAATTCTTTGTTGCTTTGTGTCTTGTGGCATGTACCCAGAATGGATTGGAAGTTTCACTAAGT
AGTTTGAACCTGGCTGTTCCTCCACCAAGATTTCATGATACCAGTAATCCTTTGCTAATCAGTGGAACCTCTGCAGCTGA
GCTCCTATGGGCTGTAAAACCTGAAGATAAGGCCAAATATGATGCAATATTTGATAGTTTAAGCCCAGTGAATGGATTTC
TATCTGGTGATAAAGTGAAACCAGTGTTGCTCAACTCTAAGTTACCTGTGGATATCCTTGGAAGAGTTTGGGAGTTGAGT
GATATTGACCATGATGGAATGCTTGACAGAGATGAGTTTGCAGTTGTCATGTTTTTGGTATACTGTGCACTGGAGAAAGA
ACCTGTGCCAATGTCCTTGCCTCCATCCTTGGTGCCACCATCTAAAAGAAAAACGTGGGTTGTATCCCCTGCAGAAAAAG
CTAAATATGATGAAATCTTCCTGAAAACTGATAAAGATATGGACGGATTTGTGTCTGGATTGGAGGTCCGTGAAATATTC
TTGAAAACAGGTTTACCGTCTACCTTACTAGCCCACATATGGTCATTATGCTACACAAAGGACGGTGGGAAGCTTTCAAA
GGAACAGTTTGTCTTGGCTTTTCACTTAATCAGTCAGAAGTTAATCAAGAGCATTGATCCTCCTCACGTTCTTACTCCTG
AAATGATTCCACCATCAGACAGGTCCAGTTTACAAAAGAACATCATAGGATCAAGTCCTGCTGCAGATTTCTCTGCTATT
AAGGAACTAGATACTCTTAACAATGAAATAGTTGACCTACAGAGGGAAAAGAATAATGTGGAACAGGACCTTAAGGAGAA
CGAAGATACTATTAAACAGAGGACAAATGAGGTTCAGGATCTTCAAGATGAAGTTCAAAGGGAGAATACTAATCTGCAAA
AACTACAGGCCCAGAAACAGCAGGTAAAGGAACTCCTTGATGAACTGGATGAGCAGAAAGCCCAGCTGGAGGAGCAACTC
AAGGAAGTCAGAAAGAAATGTGCTGAGGAGGCCCAACTGATCTCTTCTCTGAAAGCTGAATTAACCAGTCAGGAATCACA
GATCTCCACTTATGAAGAAGAATTGGCAAAAGCTAGAGAAGAGCTGAGCCATCTACAGCAAGAAACAGCAGAATTGGAGG
AGAGTGTAGAGTCAGGGAAGGCTCAGTTGGAACCTCTTCAACAGCACCTACAAGATTCACAACAGGAAATTAGTTCAATG
CAAATGAAACTGATGGAAATGAAAGATTTGGAAAATCATAATAATCATTTAAATTGGTGCAGTAGCCCACACAGCATTCT
TGTAAATGGAGCTACAGATTATTGCAGCCTCAGCACCAGCAGCAGTGAAACAGCCAACCTTAATGAACATGCTGAAGGCC
AGAGCAACCTAGAGTCTGAGCCCATACACCAGGAATCTCCAGCAAGAAGTAGTCCTGAACTACTGCCTTCTGGTGTGACT
GATGAAAATGAGGTGATTACAGCTGTTACTGAAAAAGTTTGTTCAGAACTTGACAATAATAGACATTCAAAGAGGAAGAT
CCATTTAATGTAGACTCAAGTTTGCTGACAGGTCCAGTTGCAGATACAAACTTGGATTTTTTCCAGTCTGATCCTTTCGT
TGGCAGTGATCCTTTCAAGGATGATCGTTTTGGAAAAATCGATCCATTTTGTGGTGATGTTTTCAAAGGTTCAGATCCAT
TTGCATCAGACTGTTTCTTTAGGCAATCTACTGATCCTTTTGCCACTTCAAGCACTGACCCTTTCAGTGCAGCCAACAAT
AGCGGTATTACATCGGTAGAAACGTTGAAGCACAACGATCCTTTTGCTCCTGGTAGAACA

Alignment

ORF - retro_nleu_864 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.35 %
• Parental protein coverage: 76.67 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SSGNPVYEKYYRQVDTGNTGRVLASDAAAFLKKSGLPDLILGKIWDLADTDGKGILNKQEFFVALRLVAC
          SSGNPVYEKYYRQVDTGNTGR.LASDAAA.LKKSGLPDLIL.KIWDLADTDGKGILNKQEFFVAL.LVAC
Retrocopy SSGNPVYEKYYRQVDTGNTGRMLASDAAALLKKSGLPDLILEKIWDLADTDGKGILNKQEFFVALCLVAC

Parental  AQNGLEVSLNSLNLAVPPPRFHDTSSPLLISGTSAAELPWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVK
          .QNGLEVSL.SLNLAVPPPRFHDTS.PLLISGTSAAEL.WAVKPEDKAKYDAIFDSLSPVNGFLSGDKVK
Retrocopy TQNGLEVSLSSLNLAVPPPRFHDTSNPLLISGTSAAELLWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVK

Parental  PVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVYCALEKEPVPMSLPPALVPPSKRKTWVVSP
          PVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAV.MFLVYCALEKEPVPMSLPP.LVPPSKRKTWVVSP
Retrocopy PVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVVMFLVYCALEKEPVPMSLPPSLVPPSKRKTWVVSP

Parental  AEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLISQK
          AEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLC.TKD.GKLSK.QF.LAFHLISQK
Retrocopy AEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCYTKDGGKLSKEQFVLAFHLISQK

Parental  LIKGIDPPHVLTPEMIPPSDRASLQKNIIGSSPVADFSAIKELDTLNNEIVDLQREKNNVEQDLKEKEDT
          LIK.IDPPHVLTPEMIPPSDR.SLQKNIIGSSP.ADFSAIKELDTLNNEIVDLQREKNNVEQDLKE.EDT
Retrocopy LIKSIDPPHVLTPEMIPPSDRSSLQKNIIGSSPAADFSAIKELDTLNNEIVDLQREKNNVEQDLKENEDT

Parental  IKQRTSEVQDLQDEVQRENTNLQKLQAQKQQVQELLDELDEQKAQLEEQLKEVRRKCAEEAQLISSLKAE
          IKQRT.EVQDLQDEVQRENTNLQKLQAQKQQV.ELLDELDEQKAQLEEQLKEVR.KCAEEAQLISSLKAE
Retrocopy IKQRTNEVQDLQDEVQRENTNLQKLQAQKQQVKELLDELDEQKAQLEEQLKEVRKKCAEEAQLISSLKAE

Parental  LTSQESQISTYEEELAKAREELSRLQQETAELEESVESGKAQLEPLQQHLQDSQQEISSMQMKLMEMKDL
          LTSQESQISTYEEELAKAREELS.LQQETAELEESVESGKAQLEPLQQHLQDSQQEISSMQMKLMEMKDL
Retrocopy LTSQESQISTYEEELAKAREELSHLQQETAELEESVESGKAQLEPLQQHLQDSQQEISSMQMKLMEMKDL

Parental  ENHNNQLNWCSSPHSILVNGATDYCSLSTSSSETANLNEHAEGQSNLESEPIHQESPARSSPELLPSGVT
          ENHNN.LNWCSSPHSILVNGATDYCSLSTSSSETANLNEHAEGQSNLESEPIHQESPARSSPELLPSGVT
Retrocopy ENHNNHLNWCSSPHSILVNGATDYCSLSTSSSETANLNEHAEGQSNLESEPIHQESPARSSPELLPSGVT

Parental  DENEVTTAVTEKVCSELDNNRHS-KEEDPFNVDSSSLTGPVADTNLDFFQSDPFVGSDPFKDDPFGKIDP
          DENEV.TAVTEKVCSELDNNRHS.KEEDPFNVDSS.LTGPVADTNLDFFQSDPFVGSDPFKDD.FGKIDP
Retrocopy DENEVITAVTEKVCSELDNNRHS<KEEDPFNVDSSLLTGPVADTNLDFFQSDPFVGSDPFKDDRFGKIDP

Parental  FGGDPFKGSDPFASDCFFRQSTDPFATSSTDPFSPANNSSITSVETLKHNDPFAPGGT
          F.GD.FKGSDPFASDCFFRQSTDPFATSSTDPFS.ANNS.ITSVETLKHNDPFAPG.T
Retrocopy FCGDVFKGSDPFASDCFFRQSTDPFATSSTDPFSAANNSGITSVETLKHNDPFAPGRT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_864 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Nomascus leucogenys	ENSNLEG00000016192	1 retrocopy	retro_nleu_864 ,