RetrogeneDB ID: retro_nleu_897

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397276.1:201488..202404(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACOT4
• Ensembl ID: ENSNLEG00000016052
• Aliases: None
• Description: None

Sequence

>retro_nleu_897
CGCGCGTTCCTGCGCGACGAGAACGGCGGGCTCTTCCGGGCCCACGCGCGCCACTGCGCCGAAGCCCGCGGCGAGCTGGA
CCTGGAGCGCGCGCCCGTGCTGGGCGGCAGCTTCCGGGGGATTCCAGTCCATGGGGCTGCTCTGGGCCCTGGAATCCGAG
AAGCCTTTTTGGCGCTTTCTGAAGCAGGACGTACAGATTCCCTTTATCGTGGAGTTGGAGATGCTGGACGGCCACGACCC
TGAGCCTGGACGGCTGTTGTGACAGGCGCGGCACGAGCGCGACTTCCTCCCACAGGGGGTGCGGCGCGAGTCGGTGCGCG
CGGGCCAGGTGCGCGCCACGCTCTTCCTGCCGCCAGAACCTGGACCCTTCCTAGGGATCATTGGCATCTTTGGTGTTGGA
GGGAGCCTATTGGAATATGGAGGCTGCCTCCTTGCTGGCCATGGCTTTGCCACGTTCGCTCTAGCTTATTATAACTTTGA
AGATCTCCCCAAGAACGTGGACAACACACCCCTGGAGTACTTCGAAGAAGCCCTATGCTACATGCTTCAACATCCCCAGG
TAAAAGGCCCAGGCACTGGGCTTTGGGGCATTTCTCTAGGAGCTGATATTTGTCTCTCAATGGCCTCATTCTTGAAGAAT
GTCTCAGACACAGTTTCCATCAATGGATCCGGGATCAGTGGGAACAGAGGCATAAACTATAAGCAGAATAGCATACCACC
ATTGGGCTGTGACCTGAGGAGAATCAAGGTAGCTTTCTCAGGCCTCGTGGACATCGTGGATATAAGGAATGATCTTGTAG
GAGGGTATGAGAACCCTAACATGATTTCAATAGAGAAGGCCCAGGGCCCCATCCTTTTCATTGCTGGTCAGGATGACCAT
AACTGGAGGAGTGAGTTGTATGCCCAGTCTCTGAAC

Alignment

ORF - retro_nleu_897 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.66 %
• Parental protein coverage: 72.45 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  RASLRDEKGALFRAHARYCADARGELDLERAPALGGSFAGL-EPMGLLWALEPEKPFWRFLKRDVQIPFV
          RA.LRDE.G.LFRAHAR.CA.ARGELDLERAP.LGGSF.G....MGLLWALE.EKPFWRFLK.DVQIPF.
Retrocopy RAFLRDENGGLFRAHARHCAEARGELDLERAPVLGGSFRGI>QSMGLLWALESEKPFWRFLKQDVQIPFI

Parental  VELEVLDGHDPEPGRLMCQARHERHFLPPGVRRQSVRAGRVRATLFLPPGPGPFPGIIDIFGIGGGLLEY
          VELE.LDGHDPEPGRL..QARHER.FLP.GVRR.SVRAG.VRATLFLPP.PGPF.GII.IFG.GG.LLEY
Retrocopy VELEMLDGHDPEPGRLL*QARHERDFLPQGVRRESVRAGQVRATLFLPPEPGPFLGIIGIFGVGGSLLEY

Parental  RASLLAGHGFATLALAYYNFEDLPSNMDNISLEYFEEALCYMLQHPQVKGPGIGLLGISLGADICLSMAS
          ...LLAGHGFAT.ALAYYNFEDLP.N.DN..LEYFEEALCYMLQHPQVKGPG.GL.GISLGADICLSMAS
Retrocopy GGCLLAGHGFATFALAYYNFEDLPKNVDNTPLEYFEEALCYMLQHPQVKGPGTGLWGISLGADICLSMAS

Parental  FLKNVSATVSINGSGISGNTAINYKYSSIPPLGHDLRRIKVAFSGLVDIVDIRNALVGGYENPSMIPIEK
          FLKNVS.TVSINGSGISGN..INYK..SIPPLG.DLRRIKVAFSGLVDIVDIRN.LVGGYENP.MI.IEK
Retrocopy FLKNVSDTVSINGSGISGNRGINYKQNSIPPLGCDLRRIKVAFSGLVDIVDIRNDLVGGYENPNMISIEK

Parental  AQGPILLIVGQDDHNWRSELYAQTVS
          AQGPIL.I.GQDDHNWRSELYAQ...
Retrocopy AQGPILFIAGQDDHNWRSELYAQSLN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_897 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000177465	1 retrocopy	retro_hsap_1997,
Macaca mulatta	ENSMMUG00000006856	1 retrocopy	retro_mmul_1376,
Nomascus leucogenys	ENSNLEG00000016052	1 retrocopy	retro_nleu_897 ,
Pongo abelii	ENSPPYG00000029617	1 retrocopy	retro_pabe_1638,
Pan troglodytes	ENSPTRG00000006518	1 retrocopy	retro_ptro_1369,