>retro_oana_82
CAGGGTGATGTAGTTGGAATAGATTTGGGTACTACCAATAGTTGTGTTGCCGTTATGGAGAATTCCATCCCGAAGGTCAT
AGAAAATGCTGAGGGCATGCGCACTACACCTTCCATCGTCGCCTTTACTGATGATGGCCAAAGACTTGTGGGTGTGGTTG
CGAAGCGCCAAGCTGTTACTAATCCAGAAAATACGGTTTTCGCAACAAAACGTTTCATTGGTAGGAGTTTTGACGATGAT
GCGACTCGTAAGGAACAAGCAACGCTACCTTATAAAATTGTACGAGCAAGCAATGGCGATGCTTGGATAGAAGCTCAAGG
AAAGCAATATTCTCCGAGTCAAATTGGTGCCTGTGTGTTAACTAAGATGAAGGAAACTGCCGAGGCCCATCTGGGCAGAA
GTGTCCGTCAAGCTGTCATTACAGTACCCGCTTATTTCAATGATTCCCAGCGCCAAGCGACAAAAGATGCTGGACGTATT
GCTGGATTGGAGGTATTACGTATCATCAACGAACCTACGGCTGCTGCCTTGGCATTTGGTCTGGAAAAAAATGATGGAAA
GACAATCGCCGTTTATGATTTGGGCGGGGGCACTTTTGACATATCAATTTTAGAAATTTTGGGGGGTGTATTTGAAGTGA
AAGCCACCAATGGCAATACCTCTCTTGGGGGGGAGGACTTTGACCAAAGAATTTTGCAGTATTTAATATCAGAGTTTAAA
AAAAAGCAAGGAATCGATTTAAAAAAAGACAAATTGGCACTGCAGCGTCTGAGGGAAGCGGCGGAAACTGCAAAAATCGA
ACTTTCTACTAAAACACAAACTGAAATAAATCTTCCATTCATAACAGCAGATCAGTCAGGCCCTAAACATCTACAAATAA
AATTAATGCGCGCGAAGCTGGAGGAGATTTGCGAGGATTTGTTACAAGGAACGGTGGCACCGTGTGAAAAATGTATGAAG
GATGCTTCAGTTACGGCAAGGGAATTGAATGATGTAATTTTGGTTGGAGGTATGACACGGATGCCAAGGGTGAGCGATAT
TGTTCGTAAAATTTTCGGTAAAGATGCTTCGAAATCTGTCAATCCCGATGAAGCGGTTGCCATGGGCGCTGCTATACAAG
CCGGTGTCCTAAAAGGAGAGATCAAGGATTTGTTGCTACTGGATGTCTGTCCTCTTTCTCTTGGAATTGAAACTCTAGGA
GGTGTTTTCACGCGACTAATTAACAGAAATACAACAATTCCAACAAAGAAATCCCAAGTGTTTTCAACCGCTGCTGATAA
TCAAACCCAGGTTGGTATTAAGGTTTTCCAGGGAGAACGTGGTATGGCTGCTGATAATCAGATGTTGGGGCAATTTGATT
TGGTTGGCATACCCCCTGCACCCAGG
ORF - retro_oana_82 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
70.19 % |
Parental protein coverage: |
75.04 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | KGAVIGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFAADGERLVGMPAKRQAVTNPNNTFYATK |
| .G.V.GIDLGTTNSCVAVME....KV.ENAEG.RTTPS.VAF..DG.RLVG..AKRQAVTNP.NT..ATK |
Retrocopy | QGDVVGIDLGTTNSCVAVMENSIPKVIENAEGMRTTPSIVAFTDDGQRLVGVVAKRQAVTNPENTVFATK |
|
Parental | RLIGRRYDDSEVQKDIKNVPFKIVRSSNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHAAKNAVI |
| R.IGR..DD....K.....P.KIVR.SNGDAW.EA.GK.YSPSQIGA.VL.KMKETAE..LG.....AVI |
Retrocopy | RFIGRSFDDDATRKEQATLPYKIVRASNGDAWIEAQGKQYSPSQIGACVLTKMKETAEAHLGRSVRQAVI |
|
Parental | TVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKSEDKVIAVYDLGGGTFDISVLEIQKGV |
| TVPAYFNDSQRQATKDAG.IAGL.VLR.INEPTAAALA.GL.K...K.IAVYDLGGGTFDIS.LEI..GV |
Retrocopy | TVPAYFNDSQRQATKDAGRIAGLEVLRIINEPTAAALAFGLEKNDGKTIAVYDLGGGTFDISILEILGGV |
|
Parental | FEVKSTNGDTFLGGEDFDQALLQHIVKEFKRETGVDLMKDNMALQRVREASEKAKCELSSSVQTDINLPY |
| FEVK.TNG.T.LGGEDFDQ..LQ....EF....G.DL.KD..ALQR.REA.E.AK.ELS...QT.INLP. |
Retrocopy | FEVKATNGNTSLGGEDFDQRILQYLISEFXXXQGIDLKKDKLALQRLREAAETAKIELSTKTQTEINLPF |
|
Parental | LTMDASGPKHLNMKLTRAQFENIVANLIKRTVAPCQKAMQDAEVSKSDIGEVILVGGMSRMPKVVQQTVQ |
| .T.D.SGPKHL..KL.RA..E.I...L...TVAPC.K.M.DA.V.......VILVGGM.RMP..V...V. |
Retrocopy | ITADQSGPKHLQIKLMRAKLEEICEDLLQGTVAPCEKCMKDASVTARELNDVILVGGMTRMPR-VSDIVR |
|
Parental | DLFGRAPSKAVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQ |
| ..FG...SK.VNPDEAVA.GAAIQ.GVL.G...D.LLLDV.PLSLGIETLGGVFT.LINRNTTIPTKKSQ |
Retrocopy | KIFGKDASKSVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVCPLSLGIETLGGVFTRLINRNTTIPTKKSQ |
|
Parental | VFSTAADGQTQVEIKVCQGEREMAADNKLLGQFTLIGIPPAPR |
| VFSTAAD.QTQV.IKV.QGER.MAADN..LGQF.L.GIPPAPR |
Retrocopy | VFSTAADNQTQVGIKVFQGERGMAADNQMLGQFDLVGIPPAPR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
155 .61 RPM |
SRP007412_cerebellum |
0 .00 RPM |
211 .27 RPM |
SRP007412_heart |
0 .00 RPM |
453 .06 RPM |
SRP007412_kidney |
0 .00 RPM |
169 .66 RPM |
SRP007412_liver |
0 .00 RPM |
174 .84 RPM |
SRP007412_testis |
0 .00 RPM |
140 .54 RPM |
Ornithorhynchus anatinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_oana_82 retrocopy.
Ornithorhynchus anatinus was not studied using FANTOM5 data.
retro_oana_82 was not experimentally validated.
Retrocopy orthology:
Ornithorhynchus anatinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
6 parental genes, and
6 retrocopies.