>retro_ocun_1043
TCCAATGTGCTCTGTACCTGCAGCATCTTATACAGAACTAAGCTGCCTTTCATTGTGGTTGGGAATAAAACTGACATCAC
TGACCACATTTTGCAGTGGATTGGATGCAGGATTCTAAGGATTTTTAAGATGCTTTGAATCAAGAAACTACATATATCAG
TATAACTTGTTCAATGAACCTGGTGCTGGATGAGTTTCACAGCTCACTCCAGGTGGTAGGTGTCTCTTCTAATCTGAGTT
CTGGCTTAGATGAACTCTTGGTGCATATCATCAGTGTTGCAGAAGAATATGAAAGGGAGTAAGGTCCTGAACATGAGCTT
CTGAAGAAATCACTGGCCAGTGAACAAAGCCAGCAGCAAAAAGAACAGTTGAAATGCTTTCAGAAAGATATGGGCTCTGT
AGCCTTGGACACAGAAACTGCCAAAGACAGTCTGTCTCATGTGCTGGGCCCTTCTGCAGTGATTCTGACTTGAGGAACTT
GAATGAAGAGGATGAGAAACTGACAGTGATGTTGATGACACTGACCCAGAGTTACAGAAGAAGTCATGAAGTGCCAGCAT
TCCAGAGGGTATGCAAAAATCACTGGCACAGTACAAACAGAGAAAAAACAAA
ORF - retro_ocun_1043 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
69.44 % |
Parental protein coverage: |
55.56 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
6 |
Retrocopy - Parental Gene Alignment:
Parental | NNVWCLVFSILYKTKLPFIVVMNKTDIIDH-SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFY |
| .NV.C...SILY.TKLPFIVV.NKTDI.DH..FAV.WMQD...F.DALNQETTY.S..T.SM.LVLDEF. |
Retrocopy | SNVLCTC-SILYRTKLPFIVVGNKTDITDH<HFAVDWMQDSKDF*DALNQETTYIS-ITCSMNLVLDEFH |
|
Parental | SSLRVVGVSSVLGTGLDELFVHVTSAAEEYEREYRPEYERLKKSLIQASAQSQQQKEQLERLRKDMGSVA |
| SSL.VVGVSS.L..GLDEL.VH..S.AEEYERE..PE.E.LKKSL..AS.QSQQQKEQL....KDMGSVA |
Retrocopy | SSLQVVGVSSNLSSGLDELLVHIISVAEEYERE*GPEHELLKKSL--ASEQSQQQKEQLKCFQKDMGSVA |
|
Parental | LDTGAAKDSLSPVLEPSDLILTRGT-LDEEDE-EADSDTDDID-HRVTEE-SHEEPAFQNF-MQESMAQY |
| LDT..AKDSLS.VL.PS..ILT.GT.L.EEDE.E.DSD.DD.D..RVTEE.SHE.PAFQ...MQ.S.AQY |
Retrocopy | LDTETAKDSLSHVLGPSAVILT*GT<LNEEDE<ETDSDVDDTD<PRVTEE<SHEVPAFQRV<MQKSLAQY |
|
Parental | WKRNDK |
| ..R..K |
Retrocopy | KQRKNK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
13 .30 RPM |
SRP017611_kidney |
0 .00 RPM |
13 .28 RPM |
SRP017611_liver |
0 .00 RPM |
8 .56 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1043 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1043 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1043 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.