>retro_ocun_1301
GAAGACCGCATCATCTTCAAGGCCCACAAGGTGCTGGGCAGCCGCTGGGCTGAGATCGCCAAAATGCTGCCCGGGAGGGA
TGGACAACGCTGTTTAGGCTCACTAGAACTCCACCATCAAAAGGAAAGTGGACACGAGAGGCTTCCTGAGTGAGTCCAAA
GACTGCAAACCTGTGTGTTTGCTGCTGGAGCTCGAGAACAAGGACAGCCACCAGGGTGCCCAGGCTGCAGAAGGCCAGGG
CGGTCTTGTGACCGGCTGGTCCCCCGGCACCCCCTGCCATGAAGGCGGAGGAAGGCAGCAAGGAGCAGGCGGCCACTGCC
CCTTCTGCCGAGCTGGAGCTCATCCCTGTGCAGCCGGACAGTGTGCACACTCCAGAGCCCTTGCAGTAATTCTCCAAGTG
CCAGGACCAGCAGGGCTCCCCACTGGAGACCAGCCTGCCCTACAAGCGGGTGGTGGAGGCTGCCAACCTCCTCATCTCTG
CCATGGGCTCCAGCTTCTTGGAGGCCCTGGACTTGATCGAGTCGGACCCTGATGCTTGGTGCCACCTGAGGAAATCTGAC
CTCCCCGAGGAGCAATCCACAGAGGGCAACGTCAACAGTAGCCCAGTGCAGCCTCAGGCACCACCCCAGCAGCAGGCACT
GACACCCTCCCAGCCAGCCAGCAGGCCTGGTGCCCCAGGTGACCGAGTATCTCCTGGACGGCCACGGCATCTCGCGCCTG
AGCTGCGGTAGCTGGCGTGAGCTGACCCCCATCTCCCCAGCACAGACATCAGGGGCTCCGGCGCTGGCACTCCGCACTCG
GTGCTCAAGTGGCTGAAGAAGTAGCGAGTGGCCCCGTCCCCCCATCACGGAGAGCAGTGCCAGTCTGTCCTTCTGGACTG
CAATAGCCTCACACCCGAGACCACGCCTGTCTAAACGCTGCATTTCTCGCCCTCCCAGTTTCTAAACTTCTGGAACAAAC
AGGATACCCTGGAGCTCGAGAGCCCCTCACTGACGTCCACCCCAGTGTGCAGCCAAAAGGTGGCGGTGACCACGCCCCTG
CTCCGGGATAAGACGCCGCTGCGCCCATAGGCATGCCGCGTTTGTGATCACAGATCAGAAGTACTCCTTGGACAACACTC
CCTGCACGCCCAACCCGTTCAAGGACGCCCTGGCGAAGCACGGACCCCTGAAGCCCTTGCCTCAGACCCCGCAGCTGGAG
GAGGACCTGAAGGAGGTGCTGTGCTCCGAGGCTGGCATCCAGCTCGTTGCTGAGGATGACCAGAGGCCCGAGAAGCAGAA
GAGGAAGCCTGGGCTGCAGCGGAGCCCCATCAAGAAAGTGCGGAAGTCTTAGGCTCTTGACATTGTGGACGAGGACATGA
AGCTGGTGATGTCCACAATGCCCAAGGGTCTGGCTATGCCGATCACCATCCCCTCTGGCTCTGCCAGCCACATCCTGTCT
GGAATCAAAGAGGACAACAGCCTGCTATACCAGGGCTTCCTCCAGGCCAAGCCCGAGAAGGCGGGGCCAGCCCCAAAGCC
CTGAGGCCACTTTGTGGTGCCCGATCCA
ORF - retro_ocun_1301 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
77.01 % |
Parental protein coverage: |
73.74 % |
Number of stop codons detected: |
7 |
Number of frameshifts detected |
7 |
Retrocopy - Parental Gene Alignment:
Parental | EDRIICEAHKVLGNRWAEIAKMLPGRT-DNAVKNHWNSTIKRKVDTGGFLSESKDCKPVYLLLELEDKDS |
| EDRII..AHKVLG.RWAEIAKMLPGR..DNAV..H.NSTIKRKVDT.GFLSESKDCKPV.LLLELE.KDS |
Retrocopy | EDRIIFKAHKVLGSRWAEIAKMLPGRD>DNAV*AH*NSTIKRKVDTRGFLSESKDCKPVCLLLELENKDS |
|
Parental | PQAARAAEGQGGLVTGW-PPAPPAMKEEEGSEEEAAAAPSAEPELAPVQLDSVHTPEPSQEFPKREDQEG |
| .Q.A.AAEGQGGLVTGW.PPAPPAMK.EEGS.E.AA.APSAE.EL.PVQ.DSVHTPEP.Q.F.K..DQ.G |
Retrocopy | HQGAQAAEGQGGLVTGW>PPAPPAMKAEEGSKEQAATAPSAELELIPVQPDSVHTPEPLQ*FSKCQDQQG |
|
Parental | SPPETSLPYKWVVEATNLLIPAVGSSFSEALDLIESDPDAWCDLSKFDLPEEPSAEGSIHSSPVQPQA-P |
| SP.ETSLPYK.VVEA.NLLI.A.GSSF.EALDLIESDPDAWC.L.K.DLPEE.S.EG...SSPVQPQA.P |
Retrocopy | SPLETSLPYKRVVEAANLLISAMGSSFLEALDLIESDPDAWCHLRKSDLPEEQSTEGNVNSSPVQPQAPP |
|
Parental | PQQQALT-PRQPAGLVPNVTEYRLDGHTISDLSRSSRGELIPISP-STDIGGSGTGTPPSVLKRQKKRRV |
| .QQ.....P.QPAGLVP.VTEY.LDGH.IS.LS..S..EL.PISP.STDI.GSG.GTP.SVLK..KK.RV |
Retrocopy | QQQALTP>PSQPAGLVPQVTEYLLDGHGISRLSCGSWRELTPISP<STDIRGSGAGTPHSVLKWLKK*RV |
|
Parental | ALSP-VTESSASLSF-LDCNSLTPKTTPVKTLPFSPSQFLNFWNKQDTLELESPSLTSTPVCSQKVVVTT |
| A.SP..TESSASLSF.LDCNSLTP.TTPV.TL.FSPSQFLNFWNKQDTLELESPSLTSTPVCSQKV.VTT |
Retrocopy | APSP>ITESSASLSF<LDCNSLTPETTPV*TLHFSPSQFLNFWNKQDTLELESPSLTSTPVCSQKVAVTT |
|
Parental | PLHRDKTPLH-QKHAAFVTPDQKYSMDNTPHTPTPFKNALEKYGPLKPLPQTPHLEEDLKEVLRSEAGIE |
| PL.RDKTPL....HAAFV..DQKYS.DNTP.TP.PFK.AL.K.GPLKPLPQTP.LEEDLKEVL.SEAGI. |
Retrocopy | PLLRDKTPLR>HRHAAFVITDQKYSLDNTPCTPNPFKDALAKHGPLKPLPQTPQLEEDLKEVLCSEAGIQ |
|
Parental | LIVEDDVRPEKQKRKPGLRRSPIKKVRKSLALDIVDEDVKLVMSTMPKGLAMPTSAPSGSASHVLSGVKE |
| L..EDD.RPEKQKRKPGL.RSPIKKVRKS.ALDIVDED.KLVMSTMPK....................KE |
Retrocopy | LVAEDDQRPEKQKRKPGLQRSPIKKVRKS*ALDIVDEDMKLVMSTMPKXXXXXXXXXXXXXXXXXXXIKE |
|
Parental | DNSLLNQGFLQAKPEKAGPAPKPRGHFVAPAP |
| DNSLL.QGFLQAKPEKAGPAPKP.GHFV.P.P |
Retrocopy | DNSLLYQGFLQAKPEKAGPAPKP*GHFVVPDP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
0 .17 RPM |
SRP017611_kidney |
0 .00 RPM |
0 .10 RPM |
SRP017611_liver |
0 .00 RPM |
0 .00 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1301 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1301 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1301 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.