RetrogeneDB ID: retro_ocun_1360

Retrocopy location

• Organism: Rabbit (Oryctolagus cuniculus)
• Coordinates: 7:54778740..54779184(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MORN2
• Ensembl ID: ENSOCUG00000001075
• Aliases: None
• Description: MORN repeat containing 2 [Source:HGNC Symbol;Acc:30166]

Sequence

>retro_ocun_1360
GAACTAGTGGCCCAGGGGGAATTGCAGTGTCAGGAAAATATCTTCAACATCTCCTTGTCAACTTCAGAAGTTCATAAGAT
AAACTTCGTATTTCCGGATGGAGACAAGTATGATGGTGAATATACAAAAGCATCTTCTGGAGTTTATGAGAGAAATGGAA
TAGATATTCATACCACTCCTCATAGGATTAACCACTCAGGGAGCTGGAAAGATGACAAGATTAATGGTTTTAGAAAATGT
AAGCACTTTTCAGGAGCAGTATATGAAGAACAATTTAAAGATGATAGGCTTCAAGGGCTTGGGACTTACAGATTCCCAAA
TGGAGCAAAGTACACTAGAAATTTCCATGAAAGTATAGGGGAATATACTGATATCCAAGGACTAAAATTGAGTTGCAACT
TGCATTTAACAGTTGCTCCAGGTCTAAAATTACACCTCTACCTG

Alignment

ORF - retro_ocun_1360 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.11 %
• Parental protein coverage: 95. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ELAAQGESQSQENLSSPSPSTSEVYKISFIFPNGDKYDGECTRTSSGVYERNGIGIHTTPNGIIYTGSWK
          EL.AQGE.Q.QEN....S.STSEV.KI.F.FP.GDKYDGE.T..SSGVYERNGI.IHTTP..I...GSWK
Retrocopy ELVAQGELQCQENIFNISLSTSEVHKINFVFPDGDKYDGEYTKASSGVYERNGIDIHTTPHRINHSGSWK

Parental  DDKMNGFGKLEHFSGAVYEGQFKDNMFHGLGTYVFPTGAKYTGNFNENRVEGEGEYTDIQGLEWSGNFHF
          DDK.NGF.K..HFSGAVYE.QFKD....GLGTY.FP.GAKYT.NF.E...E....YTDIQGL..S.N.H.
Retrocopy DDKINGFRKCKHFSGAVYEEQFKDDRLQGLGTYRFPNGAKYTRNFHESIGE----YTDIQGLKLSCNLHL

Parental  TAAPGLRLKLHL
          T.APGL.L.L.L
Retrocopy TVAPGLKLHLYL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	1.38 RPM
SRP017611_kidney	0.00 RPM	4.66 RPM
SRP017611_liver	0.00 RPM	0.23 RPM

ChIP-Seq

Oryctolagus cuniculus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ocun_1360 retrocopy.

TSS

Oryctolagus cuniculus was not studied using FANTOM5 data.

Lab

retro_ocun_1360 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ocun_1360 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Oryctolagus cuniculus	ENSOCUG00000001075	1 retrocopy	retro_ocun_1360 ,
Sarcophilus harrisii	ENSSHAG00000015584	1 retrocopy	retro_shar_402,