>retro_ocun_1666
GAGGATGAGGAGGAAGTTCTGGCAGAGGGTGAGGAAGAGGAGCTGGACCCCGCCGCCCCACTGTCTCCTCCTCCAGAGCT
TCGGAGGTGCTTCACTTGCCCCCAGTGCCGAAAGAGTTTCCATCGGTGGAGCTTCCGCCCCAACCTGCAGCTGGCCAACA
TGGTGCAGGTGATTCGGCAGATGCACCCAAACCCTGCCCAAGGGAGCCATGTAAATGAGCAGGCCATGTGTCCCAAACAC
CAAGAAGCCCTGACGCTCTTCTGCAAGGTAGACGAAGAGGCCATCTGTGTGGTTTGCCGTGAATCTCGGAGGCACAAACA
GCACAGTGTGGTGCCGGTGGAGGAGGTGGTGCAGGGGTACAAGGCCAAGTTGCAGGGGCATCTGGAACCCCTAAGGAAGC
ACCTGGGGGAGCTACAGGACATGAAAGCCGAGGAGGAGAGGCGGTTGGCAGAGCTAAACAGCCAGATGGATTTAGAGCTG
GCAGGTGCAGCCTCCGAGTTTGGGCAGCTGACCGAGTTTTTGGAGGAAGAGCAGGCACATCTGCAGTGGCTCATCCAAGA
GATGTACAAAGCAAAGATGGGAAGAGCTAGAGCCAATGTCAACCACTTCTCAGAGCAGTTTACCAAACTGAGTGGCCTGC
TGGCTGAGGTCCAGGAGCGGAGCCAGCAGGGAGGCCTACTGCTTCTCCAGGAGACTCTCAAAAAGTGTCAAGAGGTATTG
CAGCAGCCCCCAAAGATCTTTCCCCCTGAAATATCCCAACCCCTTGGTGATGACTTCAGGACAGACGCCATCGTGAGGAA
AATGAGCCGAGTGTTCTGTAAGGATACAAGAGTGAACCTGAAGCCAGATCCTGATGCAGCTCCTCTGGCTCCGAATCTGT
CCACCGATTCCTGTGATCCACCTGGTGGAGAGGCGGCAGGAGGTTTTTGACCATCCCTACACGTTCTCAGCCCTCAGCTA
ACTGTTGTGTACTGGGGTCCCAGGACTTAGCTCTGGCTGTCATTCTCTAGCTGTCACTACTGGG
ORF - retro_ocun_1666 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
66.76 % |
Parental protein coverage: |
54.19 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | EDEEEVLEEDEEEELDTVTPLPPPPAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQMHPTPVRGSR |
| EDEEEVL.E.EEEELD...PL.PPP..RRCFTCPQCRKSF.R.SFRPNLQLANMVQVIRQMHP.P..GS. |
Retrocopy | EDEEEVLAEGEEEELDPAAPLSPPPELRRCFTCPQCRKSFHRWSFRPNLQLANMVQVIRQMHPNPAQGSH |
|
Parental | VNEQGICPKHQEALKLFCEVDEEAICVVCRESRSHKQHSVVPLEEVVQEYKAKLQGHLEPLRKHLEVVQK |
| VNEQ..CPKHQEAL.LFC.VDEEAICVVCRESR.HKQHSVVP.EEVVQ.YKAKLQGHLEPLRKHL...Q. |
Retrocopy | VNEQAMCPKHQEALTLFCKVDEEAICVVCRESRRHKQHSVVPVEEVVQGYKAKLQGHLEPLRKHLGELQD |
|
Parental | MKAKEERRVTELKSQMKLELAAVASEFGRLTRFLAEEQAGLERRLREMHEAQLGRAGAAASRLSEQATQL |
| MKA.EERR..EL.SQM.LELA..ASEFG.LT.FL.EEQA.L.....EM..A..GRA.A.....SEQ.T.L |
Retrocopy | MKAEEERRLAELNSQMDLELAGAASEFGQLTEFLEEEQAHLQWLIQEMYKAKMGRARANVNHFSEQFTKL |
|
Parental | SRLLAEAQERSQQGGLRLLQDIKETFSRCEEVQLQPPEIWSPDLCQPHSHDFLTDAIVRKMSRMFCQAAR |
| S.LLAE.QERSQQGGL.LLQ...ET...C.EV..QPP.I..P...QP...DF.TDAIVRKMSR.FC...R |
Retrocopy | SGLLAEVQERSQQGGLLLLQ---ETLKKCQEVLQQPPKIFPPEISQPLGDDFRTDAIVRKMSRVFCKDTR |
|
Parental | VDLTLDPDTAHPA-LMLSPDRRGVRLAERRQEVVDHPKRFSADCCVL--GAQGFRSGRHYWEVEVG |
| V.L..DPD.A.P..L...P......L.ERRQEV.DHP..FSA....L..G..G..SG.H...V..G |
Retrocopy | VNLKPDPD-AAPL>LRICPPIPVIHLVERRQEVFDHPYTFSALS*LLCTGVPGLSSGCHSLAVTTG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .17 RPM |
30 .08 RPM |
SRP017611_kidney |
0 .00 RPM |
22 .60 RPM |
SRP017611_liver |
0 .00 RPM |
23 .58 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1666 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1666 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1666 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.