RetrogeneDB ID: | retro_ocun_1846 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL019321:47801..48752(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000010667 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.4 % |
Parental protein coverage: | 84.35 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 4 |
Parental | PPHTVNTLFLTNDLTEPVMEEALQKKADLILSYHPPIFLPMKRITWKSWKERLVIRALENRVAIYSPHTA |
PP.T.NTLFLTNDLTE.VM.EAL.K.ADL..SY.PPIFL....ITW.S.K.RLV..ALENRV.IYS.HTA | |
Retrocopy | PPQTINTLFLTNDLTEQVMGEALHKRADLMFSYLPPIFLHINCITWTS*KGRLVFQALENRVGIYSLHTA |
Parental | YDAAPQGVNNWLSKGLGACTSRPICPSKAHSYPTE-GT-HRVEFNVNHTQDLDKVVSAVREIEGVSVTSF |
YDAAPQG...W.SKGLGACTSR.I.PSKAH.YP.E.GT.H.V.FN.NHTQD.DKVVSAVRE.EGV.VTSF | |
Retrocopy | YDAAPQGLKKWFSKGLGACTSRHI*PSKAHGYPIE<GT<H*VQFNINHTQDMDKVVSAVREVEGVPVTSF |
Parental | SARTDGEEQT-RISLNCTEKALMQVVAQLSQNRQLYQRTEILSLEKPLL-LHTGMGRLCTLDESVSLATM |
SAR.D.EE...RI.LNCTEK.LMQVVAQLSQNR.LYQRTEILSL...L..LHT.MGR.CTLDESV.LATM | |
Retrocopy | SARID-EEKN>RILLNCTEKTLMQVVAQLSQNR*LYQRTEILSLQRSL*>LHTRMGRSCTLDESVALATM |
Parental | IERIKRHLKLTHIRLALGVERTLESRVEVVALCAGSGSSVLRGVEADLYLTGEMSHHDVLDATSRGISVI |
IE.IKRHLKLTHI.LALGV..TL.S.V..VALCAGSGSSVL.GVEADLYL.G.MSHHD.LDATS.GI..I | |
Retrocopy | IEQIKRHLKLTHIQLALGVGGTLAS*VKAVALCAGSGSSVLQGVEADLYLMGGMSHHDDLDATSQGINAI |
Parental | LCEHSNTERGFLSDLRDMLGVHLENRIHIVLSETDRDPLCVV |
LCEHSNTE.GFLSDL.D.LG..LEN.I.I.LSETDRD.LCVV | |
Retrocopy | LCEHSNTE*GFLSDLCDILGARLEN*INIILSETDRDLLCVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .71 RPM |
SRP017611_liver | 0 .00 RPM | 5 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000023186 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006639 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006935 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010667 | 16 retrocopies | |
Pongo abelii | ENSPPYG00000013063 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000704 | 1 retrocopy |