>retro_ocun_266
ATGGAGGCGGGGGACGGCCCTGCCACTGCCGCCGCCGCCTGCTACCAGCCAGCCGGCCCTCCGCGGGATGCCTGTGTCTA
CAGCAGCTGCTACTGTGAAGAAAATATTTGGAAGCTCTGTGAACACATCAAGAACCATGACCAGTACCCTTTGGAAGAGT
GTTATGCTGTCTTCATATCTAAAGAGAGAAAGATGATACCTATTTGGAAACAACAGGCAAGATGCGGGAACGGACCTGTG
ATCTGGGATTACCACGTTGTTTTGCTCCATGTTTCAAGTGGAGGACAGAGCTTCATCTATGATCTGGATACTGTCTTGCC
CTCTCCCTGTCCCTCTGACACTTACGTAGAAGATGCCTTTAAGTCTGATGACGACATTCACCCACAGTTCAGGAGGAAAT
TTAGAGTGATCCGTGCAGATTCATATCTGAAGAACTTTGCTTCCAACCGATCGCACATGAAAGACTCCAGTGGGAACTGG
AGGGAGCCGTCCCCGCCTTATCCCTGCATTGAGACTGGAGATTCCAAAATGAACCTGAATGATTTTATCAGTATGGACCC
TAAGTTGGGATGGGGCACTGTCTACACACTATCTGAATTTGCACATCGGTTTGGCAGTAAAAGCTACTGA
ORF - retro_ocun_266 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
94.71 % |
Parental protein coverage: |
99.52 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MEAGDRSAAAAAACYQPAGPPRDACVYSSCYCEENIWKLCEHIKNHDQYPLEECYAVFISNERKMIPIWK |
| MEAGD..A.AAAACYQPAGPPRDACVYSSCYCEENIWKLCEHIKNHDQYPLEECYAVFIS.ERKMIPIWK |
Retrocopy | MEAGDGPATAAAACYQPAGPPRDACVYSSCYCEENIWKLCEHIKNHDQYPLEECYAVFISKERKMIPIWK |
|
Parental | QQARPGNGPVIWDYHVVLLHVSSGGQSFIYDLDTVLPFPCPFDTYVEDAFKSDDDIHPQFRRKFRVIRAD |
| QQAR.GNGPVIWDYHVVLLHVSSGGQSFIYDLDTVLP.PCP.DTYVEDAFKSDDDIHPQFRRKFRVIRAD |
Retrocopy | QQARCGNGPVIWDYHVVLLHVSSGGQSFIYDLDTVLPSPCPSDTYVEDAFKSDDDIHPQFRRKFRVIRAD |
|
Parental | SYLKNFASDRSHMKDSSGNWREPPPPYPCIETGDSKMNLNDFISMDPKVGWGAVYTLSEFAHRFGSKS |
| SYLKNFAS.RSHMKDSSGNWREP.PPYPCIETGDSKMNLNDFISMDPK.GWG.VYTLSEFAHRFGSKS |
Retrocopy | SYLKNFASNRSHMKDSSGNWREPSPPYPCIETGDSKMNLNDFISMDPKLGWGTVYTLSEFAHRFGSKS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .06 RPM |
23 .07 RPM |
SRP017611_kidney |
0 .00 RPM |
22 .70 RPM |
SRP017611_liver |
0 .00 RPM |
18 .34 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_266 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_266 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_266 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
5 retrocopies.