RetrogeneDB ID: | retro_ocun_609 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 13:45678146..45678695(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS7 | ||
Ensembl ID: | ENSOCUG00000017928 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein S7 [Source:HGNC Symbol;Acc:14499] |
Percent Identity: | 71.35 % |
Parental protein coverage: | 75.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | WLPGLTQVRWSRYGPEYRDPRVEKEHYRKPAAELTEEERYDRELRKTQLIKAAPATTTGSVFEDPVISKF |
W...L.QV.WS..GPEYRDP.VEKEHY.KP.A..........EL.KTQLIKA.PAT.T.SVF.D.V.SKF | |
Retrocopy | WILELMQVSWSMHGPEYRDPCVEKEHYCKPMASSLRRRNTFHELKKTQLIKAVPATKTSSVFDDLVTSKF |
Parental | TNMMMKGGNKVLARSLMTQTLEAVKRKQFEKYQAASAEEQATIERN-PYVIFHQALKNCEPVIGLVPILR |
T.MMMKGGNKVLARSLMTQTLEA.KRKQFEKY.AASAE..ATIE.N.PYVIFHQAL.N.EP.IGLVP.LR | |
Retrocopy | TSMMMKGGNKVLARSLMTQTLEAMKRKQFEKYHAASAEKKATIEHN<PYVIFHQALRNGEPLIGLVPSLR |
Parental | GGHFYQVPVPLAERRRRFLAMKWMITECREKKQ-RRTLMPEKLSH |
GGHF.QVPV.LA..R..FLAMKWMIT.C.EK....R.LM.EKL.H | |
Retrocopy | GGHFLQVPVLLAD*RCHFLAMKWMITACCEKQH>GRMLMLEKLPH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .49 RPM |
SRP017611_liver | 0 .00 RPM | 1 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009287 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004752 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000014458 | 2 retrocopies | |
Felis catus | ENSFCAG00000028759 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000002873 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012264 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013928 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017928 | 1 retrocopy |
retro_ocun_609 ,
|
Procavia capensis | ENSPCAG00000015942 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008433 | 3 retrocopies |