>retro_ocun_808
TGTGCGGCCATGGCAGAACCGCAACCTGCGTCCAGCGGCCTCACCGACGAGGCCGCCGCTAGCTGCTGCTCCGACGCGGA
CCCCAGCACCAAGGATTTTTTAATGCAACAGACCATGCTATGAATTAAGGATCCTAAGAAGTCATTGGATTTCTATACTA
GAATTCTTGGAATGACGCTAATCCAAAAATTAGATTTTCCTTCTATGAAATTTTCACTCTATTTCATGGCATATGAGGAT
AAAAATGACATCCCCAAAGATAAAAATGAAAGAGTAGCATGGGCATTTTCCAGAAAAGCTACCCTTGAGCTGACACATAA
TTGGGGCACTGAAGATGATGAGACCCAGAGCTACCACAGTGGCAATTCAGACCCTCGAGGATTTGGTCACATTGGAATTG
CTGTTCCTGATGTGTACGGCGCCTGTAAAAGATCTGAAGAACTGGGAGTCAAATTTGTGAAGAAACCAGACGATGGTAAA
ATGAAAGGCCTGGCATTTATTCGAGATCCTGATGGCTACTGGATTGAAATTTTGAATCCTAACACAATCACAAGTATCAT
T
ORF - retro_ocun_808 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.86 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | CAAMAEPQPASSGLTDEAAASCCSDADPSTKDFLMQQTMLRIKDPKKSLDFYTRILGMTLIQKLDFPSMK |
| CAAMAEPQPASSGLTDEAAASCCSDADPSTKDFLMQQTML.IKDPKKSLDFYTRILGMTLIQKLDFPSMK |
Retrocopy | CAAMAEPQPASSGLTDEAAASCCSDADPSTKDFLMQQTML*IKDPKKSLDFYTRILGMTLIQKLDFPSMK |
|
Parental | FSLYFMAYEDKNDIPKDKNERVAWAFSRKATLELTHNWGTEDDETQSYHSGNSDPRGFGHIGIAVPDVYG |
| FSLYFMAYEDKNDIPKDKNERVAWAFSRKATLELTHNWGTEDDETQSYHSGNSDPRGFGHIGIAVPDVYG |
Retrocopy | FSLYFMAYEDKNDIPKDKNERVAWAFSRKATLELTHNWGTEDDETQSYHSGNSDPRGFGHIGIAVPDVYG |
|
Parental | ACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNTVTSII |
| ACKR.EELGVKFVKKPDDGKMKGLAFI.DPDGYWIEILNPNT.TSII |
Retrocopy | ACKRSEELGVKFVKKPDDGKMKGLAFIRDPDGYWIEILNPNTITSII |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .11 RPM |
71 .52 RPM |
SRP017611_kidney |
0 .10 RPM |
86 .05 RPM |
SRP017611_liver |
0 .39 RPM |
89 .41 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_808 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_808 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_808 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.