RetrogeneDB ID:

retro_ogar_1006

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873533.1:30142515..30145653(+)
Located in intron of:ENSOGAG00000000595
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:OGT
Ensembl ID:ENSOGAG00000007524
Aliases:None
Description:O-linked N-acetylglucosamine (GlcNAc) transferase [Source:HGNC Symbol;Acc:8127]


Retrocopy-Parental alignment summary:






>retro_ogar_1006
ATGGCGTCTTCGGTGGGCAACGTGGCCGACAGCGCAGAATCAACGAAACGTATGCTTTCCTTCCAAGGGTTAGCTGAGTT
GGCACATCGAGAATATCAGGCAGGAGATTTTGAAGCAGCTGAGAGACACTGCATGCAGCTCTGGAGACAAGAGCCAGACA
ATACCGGTGTGCTTTTATTACTTTCATCTATACACTTCCAGTGTCGAAGGCTGGACAGATCTGCTCACTTTAGCACTCTG
GCAATTAAACACAACCCCCTTCTGGCAGAAGCCTATTCGAATTTGGGAAACGTATATAAGGAAAGAGGGCAGTTGCAAGA
AGCAAATGAACATTATCGACATGCATTGCGTCTCAAACCTGATTTCATCGATGGTTATATTAACCTGGCAGCCGCCTTGG
TAGCAGCAGGTGACATGGAAGGGGCTGTACAAGCTTATATCTCTGCTCTTCAGTACAATCCCGATTTGTACTGTGTTCGC
AGTGACCTGGGAAACCTGCTCAAAGCCCTGGGTCGCTTGGAAGAAGCCAAAGCGTGTTATTTGAAAGCAATTGAAACGCA
ACTGAACTTTGCGGTAGCTTGGAGTAATCTTGGCTGTGTTTTCAATGCACAAGGGGAGATTTGGCTTGCAATTCATCACT
TTGAAAAGGCTGTCACCCTTGACCCAAATTTTCTGGATGCTTATATCAATTTAGGAAATGTCTTGAAAGAGGCCCGCATT
TTTGACAGAGCTGTGGCAGCTTACCTTCGTGCCCTAAGTTTGAGTCCAAATAATGCAGTGGTGCACGGCAACCTCGCTTG
TGTGTACTATGAGCAAGGCCTGATAGATCTGGCAATAGACACCTATAGGCGAGCCATTGAACTTCAACCACATTTCCCTG
ATGCTTACTGCAACCTAGCCAATGCTCTCAAAGAGAAGAGCAGTGTTGCTGAAGCAGAAGATTGTTATAATACAGCTCTC
CGTCTGTGTCCCACCCATGCAGACTCTCTGAATAACCTAGCTAATATCAAACGAGAACAGGGGAACATTGAAGAGGCAGT
TCGCTTATATCATAAAGCACTAGAAGTCTTCCCAGAATTTGCTGCTGCCCATTCAAATTTAGCAAGTGTACTACAGCAGC
AAGGAAAATTACAGGAAGCTCTGATGCATTATAAGGAGGCTATTCGAATCAGTCCTACTTTTGCTGATGCCTACTCTAAT
ATGGGAAACACTCTAAAGGAGATGCAGGATGTTCAGGGAGCCTTGCAGTGTTACACACGTGCCATCCAGATTAACCCTGC
ATTTGCAGATGCCCACAGCAATCTGGCTTCCATTCATAAGGATTCAGGAAATATTCCAGAAGCTATAGCTTCCTACCGCA
CAGCTCTGAAACTTAAGCCTGATTTTCCTGATGCTTACTGTAACTTGGCTCATTGCCTGCAGATTGTCTGTGACTGGACA
GACTATGATGAGCGAATGAAGAAGTTGGTCAGTATTGTGGCTGACCAATTAGAGAAGAACAGATTGCCTTCTGTGCATCC
TCATCATAGTATGCTATATCCTCTTTCTCATGGCTTTAGGAAGGCAATAGCTGAGAGGCATGGAAACCTCTGCCTAGACA
AGATTAAGGTCCTTCATAAACCACCATATGAACATCCAAAAGACTTGAAGCTCAGTGATGGTCGACTTCACGTAGGATAC
GTGAGTTCTGACTTTGGGAATCATCCTACTTCTCACCTTATGCAGTCCATTCCAGGCATGCACAATCCTGATAAATTTAA
GGTATTCTGTTATGCCCTGAGCCCAGATGATGGCACAAACTTCCGAGTGAAGGTGATGGCAGAAGCTAATCATTTCATTG
ATCTTTCTCAGATTCCATGCAATGGAAAAGCAGCTGATCGCATCCATCAGGATGGAATTCATATCCTTGTAAATATGAAT
GGTTATACCAAAGGTGCTCGAAATGAACTTTTTGCCCTCAGGCCAGCTCCTATACAGGCAATGTGGCTGGGATACCCTGG
AACTAGTGGTGCGCTTTTCATGGATTATATCATCACTGATCAGGAAACTTCACCAGCCAAATTTGCTGAGCAGTATTCAG
AGAAATTGGCTTATATGCCCCACACTTTCTTTATTGGTGATCATGCTAGTATGTTTCCTCACTTGAAGAAAAAAGCAGTT
ATCGATTTTAAGTCCAATGGGCACATTTATGACAATCGAATAGTTCTGAATGGCATCGACCTCCAAGCATTTCTTGATAG
TCTGCCAGATGTGAAAATTGTCAAGATGAAATGTCCTGATGGAGGGGATGATGCCGACAGCAGTAACACAGCTCTTAACA
TGCCTGTCATTCCTATGAATACTATTGCAGAAGCAGTTATTGAAATGATTAACAGAGGGCATATTCAGATAACAATTAAT
GGATTCAGTGTTAGCAACGGACTGGCAACTACCCAGATCAACAATAAGGCTGCAACTGGAGAGGAGGTTCCGCGCACCAT
TATTGTAACTACCCGTTCTCAATATGGGTTGCCAGAAGATGCCATTGTGTACTGTAACTTTAATCAGTTGTATAAAATTG
ACCCCTCTACTTTGCAAATGTGGGCAAATATTCTCAAGCGTGTTCCCAATAGTGTACTCTGGCTGTTGCGTTTTCCAGCA
GTAGGGGAACCTAATATTCAACAGTATGCACAAAACATGGGCCTTCCTCAAAACCGTATCATTTTTTCACCGATGGCTCC
TAAAGAAGAACATGTCAGAAGAGGCCAGCTGGCAGACATCTGCTTAGACACTCCACTTTGTAATGGGCACACCACTGGGA
TGGATGTCCTCTGGGCAGGGACACCCATGGTGACTATGCCAGGAGAGACTCTTGCTTCTCGAGTTGCAGCTTCCCAGCTT
ACTTGCTTAGGTTGTCTTGAACTTATTGCTAAGAGTAGACAAGAATATGAAGATATAGCTGTGAAACTGGGAACTGATCT
AGAATATCTGAAGAAAATTCGTGGCAAAGTTTGGAAGCAGAGAATATCTAGCCCTTTGTTCAACACCAAACAATACACAG
TGGAACTAGAACGGCTCTATCTACAGTTATGGGAGCATTATGCAGCTGGCAACAAACCTGACCACATGATTAAGCCTGTT
GAAGTCACTGAGTCAGCC

ORF - retro_ogar_1006 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.9 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMASSVGNVADSTEPTKRMLSFQGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR
MASSVGNVADS.E.TKRMLSFQGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR
RetrocopyMASSVGNVADSAESTKRMLSFQGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR
ParentalLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME
LDRSAHFSTLAIK.NPLLAEAYSNLGNVYKERGQLQEA.EHYRHALRLKPDFIDGYINLAAALVAAGDME
RetrocopyLDRSAHFSTLAIKHNPLLAEAYSNLGNVYKERGQLQEANEHYRHALRLKPDFIDGYINLAAALVAAGDME
ParentalGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA
GAVQAY.SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ.NFAVAWSNLGCVFNAQGEIWLA
RetrocopyGAVQAYISALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQLNFAVAWSNLGCVFNAQGEIWLA
ParentalIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID
IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN.AVVHGNLACVYYEQGLIDLAID
RetrocopyIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNNAVVHGNLACVYYEQGLIDLAID
ParentalTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY
TYRRAIELQPHFPDAYCNLANALKEK.SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY
RetrocopyTYRRAIELQPHFPDAYCNLANALKEKSSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY
ParentalRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR
.KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR
RetrocopyHKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR
ParentalAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV
AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV
RetrocopyAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV
ParentalSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGY
SIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKI.VLHKPPYEHPKDLKLSDGRL.VGY
RetrocopySIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKIKVLHKPPYEHPKDLKLSDGRLHVGY
ParentalVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQ
VSSDFGNHPTSHLMQSIPGMHNPDKF.VFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQ
RetrocopyVSSDFGNHPTSHLMQSIPGMHNPDKFKVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQ
ParentalDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMP
DGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPA..AEQYSEKLAYMP
RetrocopyDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAKFAEQYSEKLAYMP
ParentalHTFFIGDHANMFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNT
HTFFIGDHA.MFPHLKKKAVIDFKSNGHIYDNRIVLNGIDL.AFLDSLPDVKIVKMKCPDGGD.ADSSNT
RetrocopyHTFFIGDHASMFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLQAFLDSLPDVKIVKMKCPDGGDDADSSNT
ParentalALNMPVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPED
ALNMPVIPMNTIAEAVIEMINRG.IQITINGFS.SNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPED
RetrocopyALNMPVIPMNTIAEAVIEMINRGHIQITINGFSVSNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPED
ParentalAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEE
AIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSP.APKEE
RetrocopyAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPMAPKEE
ParentalHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKSRQEYEDIA
HVRRGQLAD.CLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKSRQEYEDIA
RetrocopyHVRRGQLADICLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKSRQEYEDIA
ParentalVKLGTDLEYLKKIRGKVWKQRISSPLFNTKQYTVELERLYLQMWEHYAAGNKPDHMIKPVEVTESA
VKLGTDLEYLKKIRGKVWKQRISSPLFNTKQYTVELERLYLQ.WEHYAAGNKPDHMIKPVEVTESA
RetrocopyVKLGTDLEYLKKIRGKVWKQRISSPLFNTKQYTVELERLYLQLWEHYAAGNKPDHMIKPVEVTESA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_1006 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Otolemur garnettii ENSOGAG00000007524 1 retrocopy
retro_ogar_1006 ,


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