>retro_ogar_1034
ATGGAGGCCACAGGAACAGATGAAGTTGATAAGTTAAAAACTAAATTTGTATCTGCTTGGAACAACATGAAATATAGTTG
GGTATTAAAAACAAAGATGTATTTTAGTAGAAATTCCCTTGTATTACTACTTGCAAAATGTTACTATTTTAAATATGAAG
ATGAAAGTGGAATGTTACCTGCAAGATCAAGATGTACAATAGAAGATCATGTAATTGCGGGAAATATAAAAGAATTTCAT
AAAGATTTTATTTCTAGAATATGGCTGACTTACAGAGAAGAATTTCCTCAAATAGAAGGCTCAGCTTTGACAACAGACTG
TGGTTGGGGTGTACATTGAGAATTGGCCAGATTATGTTGGCTCAAGGACTCATACTACACTTTTTTGGTAGAGCTTGGAC
CTGGCCTGGTGCTTTGAATATCGAAAATTCAGACACTGAATCATGGACTTCCCACATTGTAAGAAAAATTTACTGAATCA
TTTGAAGCATTGCTTTCAGGGGAAAGTGAACTCAAAACCCCAAAAATTTCTCTGAAGGAAACAATGAGGAAATATTCTGA
TGATTATGAAATGTGAAATGAAATTTATCACAGGAAAATCATCTCTTGGTTTGGTGATTCCCCCTTGGCTTTCTTTGGCT
TGCATCAACTAATAGAGTATGGAAAGAAATCTGGGAAAAAAGCGGGAGATTGGTATGGACCAGCTGTGGGTTGCGCACAT
TTGAAGAAAAGCAGTTGAAGAAGCAAAACATTCTGATTTACAAAGAGTAACTATTTATGTTGCACAAGATTGTACAGTTT
ACAATTCTGATGTAATTGATAAGCAGAGCACTTCCAGGACCTCTGATAATGCAGAAGACAAAGCTGTTATTACTCTGGTT
CTTGTTAGATTTGGTGGAGAAAGAACCAACACTGACTACTTAGAGTTTGTAAAGGGTATTTTAAGCCTTGAATATTGTGT
GGATATTATTGGGGGCAAACCTAAACAGTCATATTACTTTGCAGGATTTCAAGATGACAGTCTGATTTACATGGATCCTC
ATTACTGCCAACCTTTTGTAGATGTCAGCGTAAAGAATCTCCCACTTGAGATATTCCACTGCCCTTCTCCCAAAAAGATG
TCATTTTGAAAAATGGATCCTAGCTGTACAATAAGATTATATTGTCGAAACGTTCAGGACTTTGAATGAGTACCTGAAGA
AATCACCAAGAAGCTGAAAATTTCTTCCAAGGAGAAATATCCCTTATTTACTTTTGTAAATGGTCATTCCAGAGACTATG
ATTTTACATCTACTACAACCGATGAAGACCTTTTCACAGTGGATGAAAAG
ORF - retro_ogar_1034 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
87. % |
Parental protein coverage: |
96.94 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MEATGTDEVDKLKTKFVSAWNNMKYSWVLKTKTYFSRNSPVLLLGKCYHFKYEDENEMLSARSGCTIEDH |
| MEATGTDEVDKLKTKFVSAWNNMKYSWVLKTK.YFSRNS.VLLL.KCY.FKYEDE..ML.ARS.CTIEDH |
Retrocopy | MEATGTDEVDKLKTKFVSAWNNMKYSWVLKTKMYFSRNSLVLLLAKCYYFKYEDESGMLPARSRCTIEDH |
|
Parental | VIAGNVEEFRKDFISRIWLTYREEFPQIEGSALTTDCGWG-CTLRTGQMLLAQGLILHFLGRAWTWPGAL |
| VIAGN..EF.KDFISRIWLTYREEFPQIEGSALTTDCGWG.CTLR.GQ..LAQGLILHF.GRAWTWPGAL |
Retrocopy | VIAGNIKEFHKDFISRIWLTYREEFPQIEGSALTTDCGWG<CTLRIGQIMLAQGLILHFFGRAWTWPGAL |
|
Parental | NIENSDSESWTSHTVKK-FTASFEASLSGERELKTPTISLKETMRKYSDYHETRNEIYHRKIVSWFGDSP |
| NIENSD.ESWTSH.V.K.FT.SFEA.LSGE.ELKTP.ISLKETMRKYSD..E..NEIYHRKI.SWFGDSP |
Retrocopy | NIENSDTESWTSHIVRK>FTESFEALLSGESELKTPKISLKETMRKYSDDYEM*NEIYHRKIISWFGDSP |
|
Parental | LAFFGLHQLIEYGKKSGKKAGDWYGPAV-VAHILRKAVEEAKHPDLQGITIYVAQDCTVYNSDVIDTQSA |
| LAFFGLHQLIEYGKKSGKKAGDWYGPAV.VAHI.RKAVEEAKH.DLQ..TIYVAQDCTVYNSDVID.QS. |
Retrocopy | LAFFGLHQLIEYGKKSGKKAGDWYGPAV>VAHI*RKAVEEAKHSDLQRVTIYVAQDCTVYNSDVIDKQST |
|
Parental | SRTSEGAEDKAVIILVPVRLGGERTNPDYLEFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPH |
| SRTS..AEDKAVI.LV.VR.GGERTN.DYLEFVKGILSLEYCV.IIGGKPKQSYYFAGFQDDSLIYMDPH |
Retrocopy | SRTSDNAEDKAVITLVLVRFGGERTNTDYLEFVKGILSLEYCVDIIGGKPKQSYYFAGFQDDSLIYMDPH |
|
Parental | YCQPFVDVSVKDFPLETFHCPSPKKMSFRKMDPSCTIGFYCRNVQDFERTSEEITKMLRISAKEKYPLFT |
| YCQPFVDVSVK..PLE.FHCPSPKKMSF.KMDPSCTI..YCRNVQDFE...EEITK.L.IS.KEKYPLFT |
Retrocopy | YCQPFVDVSVKNLPLEIFHCPSPKKMSF*KMDPSCTIRLYCRNVQDFE*VPEEITKKLKISSKEKYPLFT |
|
Parental | FVNGHSRDYDFTSTTTNEDLFSEDEK |
| FVNGHSRDYDFTSTTT.EDLF..DEK |
Retrocopy | FVNGHSRDYDFTSTTTDEDLFTVDEK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1034 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.