RetrogeneDB ID: retro_ogar_1082

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873535.1:22319716..22319969(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ISCU
• Ensembl ID: ENSOGAG00000000936
• Aliases: None
• Description: iron-sulfur cluster scaffold homolog (E. coli) [Source:HGNC Symbol;Acc:29882]

Sequence

>retro_ogar_1082
GCTCCAGCTGGTAGTAACGTGATAAAATTACGGATTCAAGTGGATGAAAAGGAGAAACTTATGGCTTCCAGGTTTAATAT
GTTTGGCTGTGGTTCTGAAATGGATTCAAGCTTATTAGCCATTGAATGGGTTAATGGAAAATGGCAGAAGAAGCCTTGAT
GATCAAAGTAGAAACATTGAGGAGGAACTCTGCCTTCCTCCCATGAAGCTCGCTGCTCCGTGCTAACTAAAGATGCGATC
ACGGTGACCCTCA

Alignment

ORF - retro_ogar_1082 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.02 %
• Parental protein coverage: 53.12 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  APACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKG-KTVEEALTIK-NTDIAKELCLPP
          APA...V.KL.IQVDEK.K....RF..FGCGS...SS.LA.EWV.G.K..EEAL.IK....I..ELCLPP
Retrocopy APAGSNVIKLRIQVDEKEKLMASRFNMFGCGSEMDSSLLAIEWVNG<KMAEEALMIK<SRNIEEELCLPP

Parental  VKLHCSRKERMRNGSPN
          .KL.......MR...P.
Retrocopy MKLAAPC*LKMRSR*PS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1082 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000015374	2 retrocopies	retro_cjac_1584, retro_cjac_1644,
Monodelphis domestica	ENSMODG00000002828	1 retrocopy	retro_mdom_1924,
Otolemur garnettii	ENSOGAG00000000936	4 retrocopies	retro_ogar_1082 , retro_ogar_1802, retro_ogar_425, retro_ogar_847,
Xenopus tropicalis	ENSXETG00000027428	1 retrocopy	retro_xtro_66,