RetrogeneDB ID: retro_ogar_1101

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873535.1:26004751..26005074(-)
• Located in intron of: ENSOGAG00000011784

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000002526
• Aliases: None
• Description: None

Sequence

>retro_ogar_1101
ATGCTGCTTTTCTGCCCAGGCTGCAGGAATAGGCTGATCAACAGGAGGGACAGCATTGCTACTGCTTCACCTGCAACACC
TGTCCCTACGTGAATAACATCACCCTTAAGGTGACAAATCAGAAGTATCCAAAGCTGAAAGAAGTGGATGATGTGCTTGG
GGGAGTAGCTGCCTGGGAGAATGCTGACTCTACTGCAGAGCCGTGTCCCAAATGTGAACATTCTCGGGCTTACTTCATGC
AGCTTCAGACCCACCCTGCAGACGAGCCAATGACCACCTTCTACAAGTGCTGCAATGCTCAGTGTGGACACTGCTGGACA
GAC

Alignment

ORF - retro_ogar_1101 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.49 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MLLFCPGCGNGLI-VEEGQRCYRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAEPC
          MLLFCPGC.N.LI...EGQ.CY.F.CNTCPYV.NIT.KVTN.KYPKLKEVDDVLGG.AAWEN.DSTAEPC
Retrocopy MLLFCPGCRNRLI<QQEGQHCYCFTCNTCPYVNNITLKVTNQKYPKLKEVDDVLGGVAAWENADSTAEPC

Parental  PKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD
          PKCEH.RAYFMQLQT..ADEPMTTFYKCCNAQCGH.W.D
Retrocopy PKCEHSRAYFMQLQTHPADEPMTTFYKCCNAQCGHCWTD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1101 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000019715	1 retrocopy	retro_cfam_1881,
Callithrix jacchus	ENSCJAG00000011568	1 retrocopy	retro_cjac_2660,
Echinops telfairi	ENSETEG00000009989	2 retrocopies	retro_etel_1166, retro_etel_1543,
Felis catus	ENSFCAG00000009110	2 retrocopies	retro_fcat_1978, retro_fcat_409,
Homo sapiens	ENSG00000161980	1 retrocopy	retro_hsap_1861,
Myotis lucifugus	ENSMLUG00000015593	3 retrocopies	retro_mluc_1565, retro_mluc_1943, retro_mluc_341,
Oryctolagus cuniculus	ENSOCUG00000013608	1 retrocopy	retro_ocun_145,
Otolemur garnettii	ENSOGAG00000002526	2 retrocopies	retro_ogar_1101 , retro_ogar_254,
Pan troglodytes	ENSPTRG00000007525	1 retrocopy	retro_ptro_1241,
Pteropus vampyrus	ENSPVAG00000000530	1 retrocopy	retro_pvam_928,
Sus scrofa	ENSSSCG00000007970	1 retrocopy	retro_sscr_1141,