RetrogeneDB ID: retro_ogar_1204

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873539.1:7582290..7583393(+)
• Located in intron of: ENSOGAG00000033508

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BORA
• Ensembl ID: ENSOGAG00000009852
• Aliases: None
• Description: bora, aurora kinase A activator [Source:HGNC Symbol;Acc:24724]

Sequence

>retro_ogar_1204
TGTCAGACATTGCTGTCTCTTCCTGTGGATTTTAATTTAGAGAAAATATTAGGTGACTATTTCAGAGCTGATGAATTTGC
AGATCAGTCTTCTGGAAACCTCAGCTCTTCCTCTCTCAGAAGAAATCTCTTTTTTGATGGAAATGGAAGCATCTCTGATT
CTACCTTCCACTTCTCCCAGAAGTCCTCATAGCGGCGCTCAGGCCTCAATTGAAGTTTTCTATTCAATAGATTGATCTCC
TGTACAGTGTAGGAACCCTGTACCGACACCAGGTTCAGGGCAGTTTTCTTCCAGCCCTATGAAGGCTAGTGCAAAAAAAA
CACAGTGTGGGAAGTATAACCAGCCCTTCAGCTACTCCTTCACCCATTTTCTCACCCGTTGCATTTCACATAAGAAAGAC
CCACTCTCAGAATAAAGGAAGTTTACTTTTCATTCTCCTGATACTTCATCTGGAACAAATTCTAATGGAATTAATCAGTA
TATCAGAAGTCCTTATATAGATGGCTGCTCGCCAATTAAAAACTGGTCTCCTATGAGACTCGAGATGTGTAGAGGCGGTA
ACGCAGTACGAGCGCTCACTGATTCACATACCTTTTACTCTGGAGACTCATGATGAGGATAAAGAGAATATTTCTTCCAC
AGATGTTTCATCACCAGGCTTGGGTGCTGCTGAAATACACTCACGGCAATTGAATAGCGATGCTTCTACACAGGGCACAC
GTTCAGTTGTGACTGCCATGTCTGTTACACAAAATCACTCCAGTGCTTCTGAGAAAGAATTAGCTCCACTGCAGGATGTT
AAAAGCAAGAAGCAGAATAACTCTGTGGATATGGTTGATCCTATAGAGCTAGGAGATGAGAGCCCCTGGATCAAGGGGCT
GGTTGACAGCAGGAGTTTACCCAGGACTGATTTTGTGAGCGGACTTTCCTTCAGTATTGAAAACTCTAACACGTGCATGT
CGCTTCTTGCTGAAAACAGTGTCATTCCTTGTGAAAGCACTAACATTCAGGTGGCTAGTGGCTACGGCATGCAGAGGTGT
GGAAGCAGGATTATAGACAGAGTTGGGGTAGAAAGTTACTGCAAAGAAAGTGATGTACGAACT

Alignment

ORF - retro_ogar_1204 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.12 %
• Parental protein coverage: 60.29 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  CQTLLSLPVDFNLEKILGDYFRADEFADQSPGNLSSSS-LRRKLFFDGNRSISDSLPSASPRSPHSGAQA
          CQTLLSLPVDFNLEKILGDYFRADEFADQS.GNL.SSS.L.....F......S..LPS.SPRSPHSGAQA
Retrocopy CQTLLSLPVDFNLEKILGDYFRADEFADQSSGNL-SSS>LSEEISFLMEMEASLILPSTSPRSPHSGAQA

Parental  SVEVFYSIDLSPVQCRSPVQTPGSGQFSSSPIKANAKK-YSVGSITSPSPISSPAFSPVEFHIGKT-PLS
          S.EVFYSID.SPVQCR.PV.TPGSGQFSSSP.KA......SVGSITSPS...SP.FSPV.FHI.KT.PLS
Retrocopy SIEVFYSID*SPVQCRNPVPTPGSGQFSSSPMKASXXX>HSVGSITSPSATPSPIFSPVAFHIRKT<PLS

Parental  EQRKFTFHSPDASSGTNSNGITNKYIRSPYIDGCSPIKNWSPMSLEMCRGG-PQYETSLIHIPFTLETHD
          E.RKFTFHSPD.SSGTNSNGI.N.YIRSPYIDGCSPIKNWSPM.LEMCRGG..QYE.SLIHIPFTLETHD
Retrocopy E*RKFTFHSPDTSSGTNSNGI-NQYIRSPYIDGCSPIKNWSPMRLEMCRGG>TQYERSLIHIPFTLETHD

Parental  EDKEDKETISSTDVSSPGVDAAEIHLRQLNSDASTRGTRLRVTAMSITHNQSSASEKELAPLQDVESKEE
          ...EDKE.ISSTDVSSPG..AAEIH.RQLNSDAST.GTR..VTAMS.T.N.SSASEKELAPLQDV.SK..
Retrocopy ---EDKENISSTDVSSPGLGAAEIHSRQLNSDASTQGTRSVVTAMSVTQNHSSASEKELAPLQDVKSKKQ

Parental  NNTVDMVDPIELGDESTWIKGLVDSRSLPRTDFVSGLSFSIENSNMCMSPLAENSVIPCESTNIQVDSGY
          NN.VDMVDPIELGDES.WIKGLVDSRSLPRTDFVSGLSFSIENSN.CMS.LAENSVIPCESTNIQV.SGY
Retrocopy NNSVDMVDPIELGDESPWIKGLVDSRSLPRTDFVSGLSFSIENSNTCMSLLAENSVIPCESTNIQVASGY

Parental  GVQNCGSSIMDTVGVESYCKERDVQT
          G.Q.CGS.I.D.VGVESYCKE.DV.T
Retrocopy GMQRCGSRIIDRVGVESYCKESDVRT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1204 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000009852	1 retrocopy	retro_ogar_1204 ,