RetrogeneDB ID: retro_ogar_1268

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873540.1:24707452..24708755(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: VEZT
• Ensembl ID: ENSOGAG00000011835
• Aliases: None
• Description: vezatin, adherens junctions transmembrane protein [Source:HGNC Symbol;Acc:18258]

Sequence

>retro_ogar_1268
TTCAGATGGTTAGCCCTGTTACTTTCTACAGCCAATTCACCTGCTGGACACCTCCTTACTCCCACACTTTTGCCTCATTG
CATCTTATCTGATGTGATTCAAGGCCTACCTCATGCACATTCTGCCTGTTTGGAAGAGCTGAAGCGCAGCTATGAGTTCT
ATTGGTACTTTGAAACTCAGCACCAGTCAGTACCCCAGCGTTTATCCAAAACTCAGCAGAAGTCAAGGGAACTGAGTAAC
GTTCACACAGCAGTGCGCAGCTTGCAGCTCCATCTGAAAGCTTTACTAAATGAGGTAATCATTCTTGAAGATGAACTTGA
AAAGCTCATTTGTACTAAAGAAACACAAGAATTAGTGTCAGAAGCTTCTCAGATCTTAGAACAGAAATCGAAGTTGATTC
AACCCCATGTTCAAGCAAGCAACAGTTGCTGGGAAGAGGCCATTTCTCAGGTGGACAAACTACTATGAAGAAATACAGAT
AAAAAAGGCAAGCCTGAAGTAACATGTGAAAACCCGCACTGTACCCGGCACCTTTGATGAAGCCCACTCTGCACATTGCA
GACAAAGATCCAATCCCTTAGGAGCAGGAATTAGAAGCTTATGTAGATGATATAGACATAGACAGTGATTTCACAAAAGG
TGATTTTTATTACTTGTCTCAAGAAGACAAAGAGAGACAGAAGTGTGAGCATGAAGAATCCAAGAGGGTACTCCAAGAAT
TGAAATCTGTGCTGGGATTTAAAGCTTCAGAAGCAGAACGGCAGAAGTGGAAGCAATTACTATTTAGTGATCATGCTGTG
TTGAAATCCTTGTCTCCTGTAGACCCAGTGGAACCCATAAGTAATTCAGAACCATCAATGAATTCAGATATGGGAAAAGT
TGAAAAAATTATACTGAAGAGGAAAATAGTAAACACTCCACTATTGACAATGAACTAAGTAGGACTGAGTATTTATGTGA
AAACCCTGTAGAGGATGAAAATAAAGACAGTTCTACAAATGAAATCCTCCTCCAAGGAGCAGAAGAAAGAATATATTACC
AATGTGAAAGTGAAGGTGAATCTCAACAGGCAGATGGCGGTGGCCTGGCTGCTGCCCCACCAATTTGCAGGGACTCATTA
CAGCTGTTTATCAAGCAGAGGCTGGCATGGCTACAGCTGTCACCAGATTTTACCTTCACTGCTGGCCTCGCCGCAGAAGT
GGCTGCTAGATCTCTCTCCTTTACCACCATGCAGGAACAGACTTACGGCGATGAGGAGGAAAAACAAATAAATGAAGAAG
AGAAAAATGACATGGAAGAAAAT

Alignment

ORF - retro_ogar_1268 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.51 %
• Parental protein coverage: 56.14 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  FRRLALLLSTANSPAGHLLTPTLLPHCILSDVIQGLPHAHSACLEELKRSYEFYRYFETQHQSVPQRLSK
          FR.LALLLSTANSPAGHLLTPTLLPHCILSDVIQGLPHAHSACLEELKRSYEFY.YFETQHQSVPQRLSK
Retrocopy FRWLALLLSTANSPAGHLLTPTLLPHCILSDVIQGLPHAHSACLEELKRSYEFYWYFETQHQSVPQRLSK

Parental  TQQKSRELSNVHTAVRSLQLHLKALLNEVIILEDELEKLVCTKETQELVSEAYQILEQKLKLIQPHVQAS
          TQQKSRELSNVHTAVRSLQLHLKALLNEVIILEDELEKL.CTKETQELVSEA.QILEQK.KLIQPHVQAS
Retrocopy TQQKSRELSNVHTAVRSLQLHLKALLNEVIILEDELEKLICTKETQELVSEASQILEQKSKLIQPHVQAS

Parental  NSCWEEAISQVDKLLRRNTDKKGKPEVTCENPHCT-TAPLMKPTLHIADKDPIPEEQELEAYVDDIDIDS
          NSCWEEAISQVDKLL.RNTDKKGKPEVTCENPHCT..APLMKPTLHIADKDPIP.EQELEAYVDDIDIDS
Retrocopy NSCWEEAISQVDKLL*RNTDKKGKPEVTCENPHCT<PAPLMKPTLHIADKDPIP*EQELEAYVDDIDIDS

Parental  DFTKGDFYYLSQEDKERQKCEHEESKRVLQELKSVLGFKASEAERQKWKQLLFSDHAVLKSLSPVDPVEP
          DFTKGDFYYLSQEDKERQKCEHEESKRVLQELKSVLGFKASEAERQKWKQLLFSDHAVLKSLSPVDPVEP
Retrocopy DFTKGDFYYLSQEDKERQKCEHEESKRVLQELKSVLGFKASEAERQKWKQLLFSDHAVLKSLSPVDPVEP

Parental  VSNSEPSMNSDMGKVKNYT-EEENS-KPSTIDNELSRTEYLCENPVEDENKDNSTNEILLQGAEERMYYQ
          .SNSEPSMNSDMGKV......EE...K.STIDNELSRTEYLCENPVEDENKD.STNEILLQGAEER.YYQ
Retrocopy ISNSEPSMNSDMGKVEKII<TEEENSKHSTIDNELSRTEYLCENPVEDENKDSSTNEILLQGAEERIYYQ

Parental  CESEGESQQADGGGLAAAPPICRDSLQLSIKQRLARLQLSPDFTFTAGLAAEVAARSLSFTTMQEQTYGD
          CESEGESQQADGGGLAAAPPICRDSLQL.IKQRLA.LQLSPDFTFTAGLAAEVAARSLSFTTMQEQTYGD
Retrocopy CESEGESQQADGGGLAAAPPICRDSLQLFIKQRLAWLQLSPDFTFTAGLAAEVAARSLSFTTMQEQTYGD

Parental  EEEKQINEEEKNDMEEN
          EEEKQINEEEKNDMEEN
Retrocopy EEEKQINEEEKNDMEEN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1268 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000011835	1 retrocopy	retro_ogar_1268 ,