RetrogeneDB ID: retro_ogar_1362

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873544.1:776807..777570(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000011326
• Aliases: None
• Description: None

Sequence

>retro_ogar_1362
CAGAAAGGAAACAACTACAAAGATCTGAAAAAAAAAAAAAAAAAAACAAGAAATAGCATCAGTAAATTAGGTGACTATGT
TGACAAAGTAAAGAAAAAACAAAGCATCATTCATTCTGAACTAAACCCAGAAAGAAACAAAAGAGCTTGAATATCTGAAC
AAAGAAATCAAGAAAATGGCTAATATAATTTGTTCCAAGATAAAGTTCATTGAACAAAGTTTTGATCAGATGAAAGTGGG
AACCGAACTTCAGTAGGTTTTCAGATACAAAGAACTCAGCACTTGGTGCCATCTCAGATGTTTGTGGAGACCATGATAGA
GTACAAGGAAGCACAGAATCTATTTTAGGAGCATAGCAAAGGGCTTTTACAGCACCAGCTGAAAATAATTGGAAGGACCA
CCACCAGAGAGGAGCTGGAGATGCTGGAGAGCAGGAAGTCTTCCGTCTTCACTTCCAACAGTATATCAGATTCATGGATT
AGAAGACAAACTCTCAATGAGATCAAGTCTCATCACAAGGATTCATGAAGCTGGAGACCAGAATCTGTGAGCTATATGGC
ATGTTAATGGATATGGCCATGTTCATGGAGACTCAGGGTGAAATTATCAACAACATAGAAAAAAATGTTCTGAATGCCCC
AGACTATATAGAACATGCTAAAGAAGAAATTAAAAACCTGTTAAATATGGCAAAGCAAGAAGGAAAATGATATGAATTAT
TGTTTTTGTAATTATACTGTTTGTGATTGTTAGAATTATCCTA

Alignment

ORF - retro_ogar_1362 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.89 %
• Parental protein coverage: 89.93 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  EKDHFMDDFFHQVEEIRNNISKIAQYVEEV-KKNHSIILSAPNPEGKIKEELEDLNKEIKKTANKIRSKL
          .K.....D........RN.ISK...YV..V..KN........N...K...ELE.LNKEIKK.AN.I.SK.
Retrocopy QKGNNYKDLXXXXXXXRNSISKLGDYVDKV>RKNKASFIL--N*TQKETKELEYLNKEIKKMANIICSKI

Parental  KSIEQSFDQ-DESGNRTSVDLRIRRTQHSVLSRKFVEVMTEYNEAQTLFRERSKGRIQRQLEITGRTTTD
          K.IEQSFDQ.DESGNRTSV...I.RTQH.V.S..FVE.M.EY.EAQ.LF.E.SKG..Q.QL.I.GRTTT.
Retrocopy KFIEQSFDQ<DESGNRTSVGFQIQRTQHLVPSQMFVETMIEYKEAQNLF*EHSKGLLQHQLKIIGRTTTR

Parental  EELEEMLESGKPSVFTSDIISDSQITKQALNEIESRHKD-IMKLETSIRELHDMFMDMAMFVETQGEMIN
          EEL.EMLES.K.SVFTS..ISDS.I..Q.LNEI.S.HKD..MKLET.I.E.............TQGE.IN
Retrocopy EEL-EMLESRKSSVFTSNSISDSWIRRQTLNEIKSHHKD<FMKLETRICEXXXXXXXXXXXXXTQGEIIN

Parental  NIERNVMNATDYVERAKEETK-KAVKYRSKARRKKWVIVVVSVVLLGIIALII
          NIE.NV.NA.DY.E.AKEE.K.K.VKY..KARRK...I.V....L..I...I.
Retrocopy NIEKNVLNAPDYIEHAKEEIK<KPVKY-GKARRKMI*IIVFVIILFVIVRIIL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1362 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000011326	1 retrocopy	retro_ogar_1362 ,