RetrogeneDB ID: retro_ogar_1410

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873545.1:14310801..14311729(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000032498
• Aliases: None
• Description: None

Sequence

>retro_ogar_1410
AACCAGGGCCCTCTCAAGACTCCTTACCATGCAGAAATATGTTTCCTGACTTGGATCCAGGAGGGGCTGCCCCCTGATCA
CCACTCCCATGTCACCTGATATGTATCCAGGAGTCCCTGGGCCAACTATGCAAATCGTATTGTTCACTTTCTGGCCATGC
ACAGAAGGGTGAGCCTGACCGTCTTTGCTGCCCACCTCAACCGCTTCAGGAAATCAGAGTACCAGCAGGGGCTTACCAGG
ATGGATCAGGAAGGGGTCCAGCTGCACATTGTGGGTTATGAAGAATTTGAATACTGTTGGGACAACTTTGTGTACAACCA
GAGAAATTGATTTGTGCCTTGGAATGGATTGAATGAAAATTATGAGTTCCTGGTCCCCAAGCTGGAGGAGATTCTCAGAA
GCCCTTTGGATAGGATGAGTTAAAAGAATTCAGCATCCACTTTCAGAACCAGCTGCAGGCTTATGAGAAAAGCACCTGGC
TGGGCTTTACGGTGGAAACAACCAAGTCGCCTGTCACCATTCACAGAGGAGGCTTTTGAAACCAGGGCCCTCCAAGATTC
CTTGCCATGCAGAAGTATGCTTCCTCACTTTCCAGGAGGTGCTGTCCCCTGACCCCCACTACCAAGTCACCTGGTACACA
TCCTGGAGTCCTGGCGCTGACTGTGCAGATCTTGTGGCTAATTTTCTGGCTAAACACAGAAATTTGAGCCTGACCATTTT
CGCTGCCTGACTCCACTACCACGGTGACCCAGAAATGCATAGGAGACTTCGCAGGATGTATCAGCAAGGGGCCAATGTGG
ACATCATGTCTGTTACAGAATTTCAATACTGTTGGGACAACTTTGTGTACAACCAGAGAAAGCAATTCATGCCTTGGAAT
GGATTGTATGAAAATTATGAATTCCTGGTCCCCAAGCTGGAGGAGATT

Alignment

ORF - retro_ogar_1410 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75. %
• Parental protein coverage: 81.36 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SQGPVKTPCHAEECFLTWIQGVLPPDHHYHVTWYVSRGPCANCANLIVHFLAMHRRVTLTIFAAHLNFFW
          .QGP.KTP.HAE.CFLTWIQ..LPPDHH.HVT.YVSR.P.AN.AN.IVHFLAMHRRV.LT.FAAHLN.F.
Retrocopy NQGPLKTPYHAEICFLTWIQEGLPPDHHSHVT*YVSRSPWANYANRIVHFLAMHRRVSLTVFAAHLNRFR

Parental  ESDFQQGLLRMDQEGVQLHIMGYEEFEYCWDNFVYNQRKQFVPWNGLNENYEFMVSTLEDILRSPLDRI-
          .S..QQGL.RMDQEGVQLHI.GYEEFEYCWDNFVYNQR..FVPWNGLNENYEF.V..LE.ILRSPLDR..
Retrocopy KSEYQQGLTRMDQEGVQLHIVGYEEFEYCWDNFVYNQRN*FVPWNGLNENYEFLVPKLEEILRSPLDRM<

Parental  RQKDFSIHFRNSLWLDDKSTWLCFEVKRTKSPVPLYRGVFRNQSPP-KTPCHAEVRFFTWLQDLPPDFCC
          ..K.FSIHF.N.L....KSTWL.F.V..TKSPV...RG.F.NQ.PP.K.PCHAEV.F.T....L.PD...
Retrocopy ELKEFSIHFQNQLQAYEKSTWLGFTVETTKSPVTIHRGGF*NQGPP<KIPCHAEVCFLTFQEVLSPDPHY

Parental  QFTWYLSWSPCADCADLVANFLAKHRNVSLTIFVARLYYYRDPEMHRGLRRMYQEGANVDIMSVIEFEYC
          Q.TWY.SWSP.ADCADLVANFLAKHRN.SLTIF.A.L.Y..DPEMHR.LRRMYQ.GANVDIMSV.EF.YC
Retrocopy QVTWYTSWSPGADCADLVANFLAKHRNLSLTIFAA*LHYHGDPEMHRRLRRMYQQGANVDIMSVTEFQYC

Parental  WDNFVYNQGKQFVPWNGLNENYEFLVPRLQEI
          WDNFVYNQ.KQF.PWNGL.ENYEFLVP.L.EI
Retrocopy WDNFVYNQRKQFMPWNGLYENYEFLVPKLEEI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1410 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000032498	2 retrocopies	retro_ogar_1098, retro_ogar_1410 ,