RetrogeneDB ID: | retro_ogar_1487 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873549.1:10627690..10628151(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NDUFA8 | ||
| Ensembl ID: | ENSOGAG00000015093 | ||
| Aliases: | None | ||
| Description: | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa [Source:HGNC Symbol;Acc:7692] |
Retrocopy-Parental alignment summary:
>retro_ogar_1487
ATGCCCAGGAGCGTCGAGCTGTCCACTGTGGAGAAGCTGAAGTGCAGGAAGTGGAAGTCACTTCTGCTGTGTTCAGGCTG
CGGCCCATCGCTGTGGAGCTCAGCGATCAGCCCAGCAGGGGTTCCCGCTCTGTGGCTGGGACAGACAGACCCGAGGCCGT
GTTCAGATGAGGGCAACTGGTCAACGAGGGTGCTGTGGACTTCTGTAGGCAGAGGAAGCGTCACTGCGCAGAACCTTTGA
CCGAATATTGGACCTGCATTGATTATTCAGGACTGCAGTTACTTGGTCACTGTCACAAACAGCAGGCAAAGTTTGACGGT
TGTGTGCGGGACAAAGCAGGCTGGGTGCGGCCTGACCCGGGAGAACCGTCAGAAGTCACCCAGGTGAAAACAGACCGACC
TGTACCGGAGAGGCCCTGCCACTCAAGACCACGATCTGAGCCTGAGGCTGAGATCCAGGGA
ORF - retro_ogar_1487 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 65.62 % |
| Parental protein coverage: | 90.7 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 4 |
Retrocopy - Parental Gene Alignment:
| Parental | MPGIVELPTLEELK-VQEVKVSSAVLK-AAAHHFGAQCDKANKEFMLCRWEEK-DPRRCLEEG-KLVNKC |
| MP..VEL.T.E.LK.VQEV.V.SAV...AAAH..GAQ...A...F.LC.W....DPR.C..EG..LVN.. | |
| Retrocopy | MPRSVELSTVEKLK<VQEVEVTSAVFR<AAAHRCGAQ-RSAQQGFPLCGWDRQ<DPRPCSDEG<QLVNEG |
| Parental | ALDFFRQIKRHCAEPFTEYWTCIDYSGEQLFRHCRKQQAKFDECVLDKLGWVRPDLGELSKVTKVKTDRP |
| A.DF.RQ.KRHCAEP.TEYWTCIDYSG.QL..HC.KQQAKFD.CV.DK.GWVRPD.GE.S.VT.VKTDRP | |
| Retrocopy | AVDFCRQRKRHCAEPLTEYWTCIDYSGLQLLGHCHKQQAKFDGCVRDKAGWVRPDPGEPSEVTQVKTDRP |
| Parental | IPENPYHSRPRPAPNPEIEG |
| .PE.P.HSRPR..P..EI.G | |
| Retrocopy | VPERPCHSRPRSEPEAEIQG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1487 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 4 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000015093 | 1 retrocopy |
retro_ogar_1487 ,
|
| Rattus norvegicus | ENSRNOG00000005668 | 1 retrocopy | |
| Sarcophilus harrisii | ENSSHAG00000011368 | 1 retrocopy | |
| Sus scrofa | ENSSSCG00000005528 | 1 retrocopy |