RetrogeneDB ID: retro_ogar_154

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873582.1:10006691..10008194(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000026946
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000016546
• Aliases: None
• Description: None

Sequence

>retro_ogar_154
ATGGCCTTTATGCTGCTTGCACCGCGGCTGGCCCGCAACTGCCAGCACAACTTCCACCTTCTGGGGCCAGGATCCAGACA
CATCAGTCAAGCTGCAGCCAAAGTTGATATTGAGTTGGATTATGATGGGCCTCTGATGAAAACGGAAGTCCCAGGGCCTA
GATCTCGGGAGTTAATGAAGCAGCTGAACACGATTCAGAACGCAGAGGCTGTGCATTTCTTCTGCAATTACCAAGAGAGC
CGAGGCAACTACCTGGTTGATGTGGATGGCAACCGGATGCTGGACCTGTATTCTCAGATCGCCTCTGTGCCCATAGGTTA
CAGCCATCCTGCTCTCATGAAACTCCTCCAACAGCCTCAGAACGCGAGCACTTTCATCAACAGACCTGCCCTCGGAATCC
TGCCTCCGGAGAACTTTGTGGAGAAGCTCCGGGAGTCCTTGCTCTCGGTGGCTCCCAAAGGGATGTCCCAGCTCATCACC
ATGGCCTGTGGCTCCTGCTCCAACGAAAACGCCTTCAAGACCATCTTCATGTGGTACCGGAGCAAGGAAAGAGGGCAAAG
GGGCTTCTCCAGAGAAGAACTGGAGACCTGCCTGATTAACCAGGCCCCCGGGTGCCCTGACTACAGCATCCTCTCCTTCA
TGGGCGGATTCCATGGCAGGACCATGGGTTGCCTAGCGACCTCGCACTCCAAAGCCATTCACAAGATCGACATCCCTTCC
TTCGACTGGCCCATCGCACCCTTCCCACGGCTGAAATATCCCCTGGAAGAGTTTGTGAAAGAAAACCAGCAGGAAGAAGC
CCACTGCCTAGAAGAGGTGGAAGATCTAATCGTGAAGTACGGGAAGGAGAAGAAAACGGTGGCTGGGATCGTCGTGGAGC
CCATCCAGGCAGAGGGAGGAGACAACCACGCATCGGATGACTTCTTCCGCAAGCTGCGAGACATGGCCAGGAAGCATGGC
TGTGCCTTCTTGGTGGATGAGGTCCAGACTGGAGGGGGCTCTACTGGCAAGTTCTGGGCTCATGAGCACTGGGGCTTGGA
CGACCCAGCAGATGTGATGACCTTCAGCAAGAAGATGATGACCGGCGGCTTCTTCCACAAAGAAGAGTTAAGACCCAACA
CCCCAAACCGGATCTTCAACACCTGGCTGGGGGACCCATCCAAGAACCTACTGCTGGCCGAGGTCCTCAATGTTATCAAG
AGGGAAGACCTGCTGAGTAACGTGGCACATGCCGGGAAGGTCCTGCTCACAGGGCTGCTGGACCTCCAGGCCCGGCACCC
CCAGTTCATCAGCAGAGTGAGAGGCAGAGGCACCTTTTGCTCCTTCGATGCTCCAGACGAATCGATCCGTAATAAGCTCA
TCTTAATGGCCAGAAACAAAGGCGTGGTGTTGGGGGGCTGTGGCGACAAATCCATTCGTTTCCGACCTATGTTGGTCTTC
AGGGATCACCATGCTCACCTGTTCCTCAATATTTTCAGTGACATCTTAGTCGATTTCAAGTAA

Alignment

ORF - retro_ogar_154 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.06 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QELMKQLNTIQNAEAVHFFCNYQESRGNYLVDVDGNRMLDLYSQISSVPIGYSHPALVKLLQQPQNASTF
          .ELMKQLNTIQNAEAVHFFCNYQESRGNYLVDVDGNRMLDLYSQI.SVPIGYSHPAL.KLLQQPQNASTF
Retrocopy RELMKQLNTIQNAEAVHFFCNYQESRGNYLVDVDGNRMLDLYSQIASVPIGYSHPALMKLLQQPQNASTF

Parental  INRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQRGFSKEELE
          INRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQRGFS.EELE
Retrocopy INRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQRGFSREELE

Parental  TCMINQAPGCPDYSILSFMGGFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQE
          TC.INQAPGCPDYSILSFMGGFHGRTMGCLAT.HSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQE
Retrocopy TCLINQAPGCPDYSILSFMGGFHGRTMGCLATSHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQE

Parental  EARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGST
          EA.CLEEVEDLIVKY.K.KKTVAGI.VEPIQ.EGGDNHASDDFFRKLRD..RKHGCAFLVDEVQTGGGST
Retrocopy EAHCLEEVEDLIVKYGKEKKTVAGIVVEPIQAEGGDNHASDDFFRKLRDMARKHGCAFLVDEVQTGGGST

Parental  GKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEELRPNAPYRIFNTWLGDPSKNLLLAEVINVIKREDLL
          GKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEELRPN.P.RIFNTWLGDPSKNLLLAEV.NVIKREDLL
Retrocopy GKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEELRPNTPNRIFNTWLGDPSKNLLLAEVLNVIKREDLL

Parental  SNAAHAGKVLLTGLLDLQARYPQFISRVRGKGTFCSFDTPDESIRNKLILMARNKGVVLGGCGDKSIRFR
          SN.AHAGKVLLTGLLDLQAR.PQFISRVRG.GTFCSFD.PDESIRNKLILMARNKGVVLGGCGDKSIRFR
Retrocopy SNVAHAGKVLLTGLLDLQARHPQFISRVRGRGTFCSFDAPDESIRNKLILMARNKGVVLGGCGDKSIRFR

Parental  PTLVFRDHHAHLFLNIFSDILADFK
          P.LVFRDHHAHLFLNIFSDIL.DFK
Retrocopy PMLVFRDHHAHLFLNIFSDILVDFK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_154 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000016546	1 retrocopy	retro_ogar_154 ,