RetrogeneDB ID: retro_ogar_1544

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873550.1:6766542..6766997(-)
• Located in intron of: ENSOGAG00000002814

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FIS1
• Ensembl ID: ENSOGAG00000028158
• Aliases: None
• Description: fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:21689]

Sequence

>retro_ogar_1544
ATGGAGGCCGTGTTGAACGAAATGGTGTCTGTGGATGACTTGCTGAAGTTTGAAAAGAAATTTCAGTCTGAGAAGTCAGC
AGGCTTGGTGTCCAAGAGCACGCAGTTTGAGCACGCCTGGTGCCTGGTGCGGAGCAAGTACAATGATGACATTATAAAGG
CATCGCGCTGCTCGAGGTGCTGCTGCCCAACGGGAGCAAAGAGGAGCAGTGGGATTATGTCTTCTACCTGGCTGTGGGGA
ACCACCAGCTCAAAGAATATGAGAAAGCCTTAAAGTACGTTTGAGGGCTGCTGCAGACTGAGCCCCAAAACAACCAAGCC
AAGGAACTGGAATGGCTTATTGATAAGGCCATGAAGAAAGGTGGACTAGTGGGCATGGCCATTGTTGGAGGCCTGGCCCT
GGGCATGGCAGGACTGGCTGGACTCATCGGACTTGCTGTGTCCACGTCCAAATCC

Alignment

ORF - retro_ogar_1544 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.54 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MEAVLNELVSVDDLLKFEKKFQSEKSAGSVSKSTQFEYAWCLVRSKYNDDI-RKGIALLEELLPKGSKEE
          MEAVLNE.VSVDDLLKFEKKFQSEKSAG.VSKSTQFE.AWCLVRSKYNDDI..KGIALLE.LLP.GSKEE
Retrocopy MEAVLNEMVSVDDLLKFEKKFQSEKSAGLVSKSTQFEHAWCLVRSKYNDDI<YKGIALLEVLLPNGSKEE

Parental  QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMALGVAGL
          Q.DYVFYLAVGN..LKEYEKALKYV.GLLQTEPQNNQAKELE.LIDKAMKK.GLVGMAIVGG.ALG.AGL
Retrocopy QWDYVFYLAVGNHQLKEYEKALKYV*GLLQTEPQNNQAKELEWLIDKAMKKGGLVGMAIVGGLALGMAGL

Parental  AGLIGLAVSKSKS
          AGLIGLAVS.SKS
Retrocopy AGLIGLAVSTSKS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1544 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000013800	2 retrocopies	retro_cfam_557, retro_cfam_755,
Callithrix jacchus	ENSCJAG00000016053	1 retrocopy	retro_cjac_1913,
Loxodonta africana	ENSLAFG00000020494	1 retrocopy	retro_lafr_702,
Myotis lucifugus	ENSMLUG00000024207	1 retrocopy	retro_mluc_168,
Monodelphis domestica	ENSMODG00000005034	1 retrocopy	retro_mdom_1773,
Otolemur garnettii	ENSOGAG00000028158	1 retrocopy	retro_ogar_1544 ,
Rattus norvegicus	ENSRNOG00000001420	2 retrocopies	retro_rnor_1659, retro_rnor_1689,
Sus scrofa	ENSSSCG00000027757	1 retrocopy	retro_sscr_1083,