RetrogeneDB ID: retro_ogar_1568

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873551.1:13585072..13586288(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000001839
• Aliases: None
• Description: None

Sequence

>retro_ogar_1568
ATGTCCAATGAACAAAATTCTTGGACAAGCTCCACTATTCAGAAAATAGCCCTGGGCCTCAGGATCCCAGCCAGTGCAAC
AGTCACCTACATCCTATACCTCAGGTACAGGAGAGCAGAGAAGAGTGGCTGACGTTTGTTGGGGAGGCTGACATTGAAAT
AGAGATGTGAGTTCCCCAGGAAGCTGTGAAGCTCATCGTTGGCCGGCAAGGGGCCAATATTAAACAGCTGCGGAAACAGA
CAGGTGCTGGTGTTGCTGCGGACACAGAGGATGTAGGTGATGAGCGGGTGCTGCTTATCAGTGGTTTTCCTGTTCAGGTG
CGCAAGGCCAAAGCAGCGATCCATCAGATCTTGATGGAGAACACCCCAGTGGCTGAGCAGCTCTCTGTTCCCCAGAGATC
CGTGGGCAGAATCATAGGAAGAAGCAGTGAGACAATTCATTCTCTCTGTAAAGCCTCTGGAGCCAAAATTACCTGTGACA
AAGAATCAGAGGGGACATTACTACTATCAAGACTTATAAAAATTTCAGGAACACAGAAGGAAGTGGCAGCAGCCAAACAT
TTGATACTGGAGAAAGTTTCAGAAGATGAAGAGCTTTGGGAGAGAACTGCACATTGTGCAGAAACTAGAGTCCCATGCAA
GCACCCATCAGTGTGAGAAGAGAGGAAATGACGGAGCCGGATGGAGCTGGAGAGCCAGCAGGAGGGAAAAACACAAGTTC
CAGCATGGGGCAGGCTGCTCCCTGGGCAGTTACTCCCCACAGAGGAGGAGGTGACATGGCTGCTGTGGGGCCGAAGGAAG
GCTCCAGGGAGAAACCTAATGCTGACAGCTTTCAGAAGTCTGGCGCCCAGGCCATTCCGGAGACATCCATGTAGGAAATC
CCCAGCCCTGACTTCAGTTTCCATGCTGATGAGTACCTAGAAGTCCATGTCTCTGCCTCTGAACACCCAACCACTTCTGG
ATCCAGATCATTGGCTCCCGCAGCCTGTAGTTAGATAAAGCTTGTCAATGAGAAGACCCAGCACTATGAAAATCGGCTGC
CTGAAGATTTGACTGTGCAGATAGGAGACACTGTAGCAGCACCTTTACTTACAAATGGTTCCTAGTATGGAGCCCAAATC
CTTGGGACCTTGGAAAATGGGAACTATGACTTCTACGGTGTTGCCTTTGGATGTAATGGAGACTGTCCACTGAAAGACCT
CAAGGCTCCCAGGAGT

Alignment

ORF - retro_ogar_1568 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.18 %
• Parental protein coverage: 71.78 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MSTEQNSWTRLFTAQKIALGLGIPASAAVAYILYRRYR-ESREERLTFVGEDDIEIEMRVPQEAVKFIIG
          MS.EQNSWT...T.QKIALGL.IPASA.V.YILY.RYR.ESREE.LTFVGE.DIEIEM.VPQEAVK.I.G
Retrocopy MSNEQNSWTSS-TIQKIALGLRIPASATVTYILYLRYR<ESREEWLTFVGEADIEIEM*VPQEAVKLIVG

Parental  QQGANIKQLRKQTGARIDVDTENVGDERVLLISGFPVQVCKAKAAIHQILIENTPVSEQLSVPQRSVGRI
          .QGANIKQLRKQTGA....DTE.VGDERVLLISGFPVQV.KAKAAIHQIL.ENTPV.EQLSVPQRSVGRI
Retrocopy RQGANIKQLRKQTGAGVAADTEDVGDERVLLISGFPVQVRKAKAAIHQILMENTPVAEQLSVPQRSVGRI

Parental  IGRGGETIRSICKASGAKITCDKESEGTLLLSRRIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAE
          IGR..ETI.S.CKASGAKITCDKESEGTLLLSR.IKISGTQKEVAAAKHLILEKVSEDEEL..R.AH.AE
Retrocopy IGRSSETIHSLCKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEELWERTAHCAE

Parental  TRVPRKQ-PISVRREELTEPDRAGEPAIGKNMSSSMGQPAPRAVTPHKGGGDMAAVGPKESSWEKPNDDS
          TRVP.K..PISVRREE.TEPD.AGEPA.GKN.SSSMGQ.AP.AVTPH.GGGDMAAVGPKE.S.EKPN.DS
Retrocopy TRVPCKH<PISVRREEMTEPDGAGEPAGGKNTSSSMGQAAPWAVTPHRGGGDMAAVGPKEGSREKPNADS

Parental  IQKSGAQAIPEMSVYEIPSPDFSFHADEYLEVYVSASEH-PNHFWIQIIGSRSLQLD-KLVNEMTQHYEN
          .QKSGAQAIPE.S..EIPSPDFSFHADEYLEV.VSASEH.PNHFWIQIIGSRSL.LD.KLVNE.TQHYEN
Retrocopy FQKSGAQAIPETSM*EIPSPDFSFHADEYLEVHVSASEH<PNHFWIQIIGSRSL*LD>KLVNEKTQHYEN

Parental  SLPEDLTVQIGDIVAAPLLTNGSWYRAQILGTLENGNYDLYYVDFGDNGDCPLKDLRALRS
          .LPEDLTVQIGD.VAAPLLTNGS.Y.AQILGTLENGNYD.Y.V.FG.NGDCPLKDL.A.RS
Retrocopy RLPEDLTVQIGDTVAAPLLTNGS*YGAQILGTLENGNYDFYGVAFGCNGDCPLKDLKAPRS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1568 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000012856	1 retrocopy	retro_cfam_514,
Oryctolagus cuniculus	ENSOCUG00000001387	1 retrocopy	retro_ocun_1361,
Otolemur garnettii	ENSOGAG00000001839	1 retrocopy	retro_ogar_1568 ,