RetrogeneDB ID: retro_ogar_161

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873521.1:31464803..31466102(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000025149
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000006190
• Aliases: None
• Description: None

Sequence

>retro_ogar_161
ATGGCGTCCCCTGTAGCAGCACAGGCCAGGAGTCTTCTGCGAGACGTGGCTCTCAGGCCCGCGTTCCTGGCCGCCCGGTC
CCAGGCAGTTCAATTAACCTCCAGAAGATGGCTGAACCTGCAGGAATACCAGAGCAAGAAACTGATGTCTGACAACGGAG
TGAGAGTTCAAAGATTCTTTGTCGCAGACACTGCGAATGAAGCTCTTGAGGCTGCTAAGAAACTAAATGCAAAAGAAATC
GTTTTAAAAGCCCAGATCTTAGCTGGAGGAAGAGGAAAAGGTGTCTTCAATAGTGGTTTGAAAGGAGGTGTTCATTTAAC
AAAAGATCCAAAAGTCGTGGGACAGCTGGCCAAACAGATGATTGGATATAATCTAGCCACAAAGCAAACTCCAAAAGAAG
GTGTGAAAGTTAACAAGGTGATGGTTGCTGAAGCCTTGGACATTTCCAGAGAAACCTACCTGGCGATTCTGATGGACCGG
TCCTGCAATGGCCCTGTGTTGGTGGGAAGCCCCACGGGGGGAGTTGACATTGAAGAGGTGGCTGCTTCAAATCCAGAACT
TATTTTTAAGGAGCAAATTGACATTTTTGAAGGGATAAAGAACAGCCAGGCACAACGGATGGCAGAAAATCTAGGTTTCC
TCGGGCCTTTGAAAAACCAGGCTGCAGATCAAATTAAGAAGCTGTATAATCTGTTCCTGAAAGTTGATGCTACTCAGGTG
GAAGTGAATCCCTTTGGTGAAACTCCAGAAGGACAAGTTGTCTGTTTTGATGCCAAGATAAACTTTGATGACAATGCAGA
ATTCCGACAAAAGGATATATTTGCTATGGATGACAAATCAGAGAATGAGCCCATTGAAAATGAAGCTGCCAGATATGATC
TAAAATACATAGGACTGGATGGAAACATTGCCTGCTTTGTGAATGGTGCTGGGCTCGCCATGGCTACTTGTGACATCATT
TTCCTTAATGGTGGGAAGCCAGCCAACTTCTTGGATCTTGGTGGCCGTGTAAAGGAAACACAAGTATATCAAGCATTTAA
GTTACTCACAGCTGATCCTAAGGTTGAAGCCATCCTTGTCAATATTTTTGGTGGTATTGTCAACTGTGCCATCATTGCCA
ATGGAATCACCAAAGCCTGCCGGGAACTAGAACTCAAGGTGCCCTTGGTGGTCCGGCTTGAAGGAACTAACGTCCAAGAG
GCCCAGAACATACTCAGCAACAGTGGGCTGCACATTATGTCAGCTGTCGACCTGGAGGACGCAGCCAAGAAGGCTGTGGC
CAGTGTGTCCAAGAAGTGA

Alignment

ORF - retro_ogar_161 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.22 %
• Parental protein coverage: 99.31 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KRKNAKEIVLKAQILAGGRGKGVFNSGLKGGVHLTKDPKVVGQLAKQMIGYNLATKQTPKEGVKVNKVMV
          K..NAKEIVLKAQILAGGRGKGVFNSGLKGGVHLTKDPKVVGQLAKQMIGYNLATKQTPKEGVKVNKVMV
Retrocopy KKLNAKEIVLKAQILAGGRGKGVFNSGLKGGVHLTKDPKVVGQLAKQMIGYNLATKQTPKEGVKVNKVMV

Parental  AEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIFEGIKNSQAQRMAENLG
          AEALDISRETYLAILMDRSCNGPVLVGSP.GGVDIEEVAASNPELIFKEQIDIFEGIKNSQAQRMAENLG
Retrocopy AEALDISRETYLAILMDRSCNGPVLVGSPTGGVDIEEVAASNPELIFKEQIDIFEGIKNSQAQRMAENLG

Parental  FLGPLKNQAADQIKKLYNLFLKVDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSEN
          FLGPLKNQAADQIKKLYNLFLKVDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSEN
Retrocopy FLGPLKNQAADQIKKLYNLFLKVDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSEN

Parental  EPIENEAARYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKETQVYQAFKLLTAD
          EPIENEAARYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG.VKETQVYQAFKLLTAD
Retrocopy EPIENEAARYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGRVKETQVYQAFKLLTAD

Parental  PKVTLLFV
          PKV....V
Retrocopy PKVEAILV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_161 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000172340	1 retrocopy	retro_hsap_1044,
Gorilla gorilla	ENSGGOG00000027438	1 retrocopy	retro_ggor_825,
Myotis lucifugus	ENSMLUG00000017294	1 retrocopy	retro_mluc_695,
Macaca mulatta	ENSMMUG00000009693	2 retrocopies	retro_mmul_1273, retro_mmul_1995,
Mus musculus	ENSMUSG00000061838	1 retrocopy	retro_mmus_3720,
Nomascus leucogenys	ENSNLEG00000007553	1 retrocopy	retro_nleu_915,
Otolemur garnettii	ENSOGAG00000006190	1 retrocopy	retro_ogar_161 ,
Otolemur garnettii	ENSOGAG00000007452	1 retrocopy	retro_ogar_2196,
Pongo abelii	ENSPPYG00000013735	1 retrocopy	retro_pabe_2624,
Pteropus vampyrus	ENSPVAG00000004554	1 retrocopy	retro_pvam_912,