RetrogeneDB ID: retro_ogar_1725

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873563.1:3963481..3964159(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CPB2
• Ensembl ID: ENSOGAG00000012039
• Aliases: None
• Description: carboxypeptidase B2 (plasma) [Source:HGNC Symbol;Acc:2300]

Sequence

>retro_ogar_1725
GTAACCTATTTATATGGAATGAATGAGAGGTATACCAATCTTCTGAATAACGTGGATTTCTACGTTATGCCACTGATTAA
TGTGGATGGTTATGACTACACATGGAAAAAGGATCGAATGTGGAGAAAGAACCGTTCTCTTCACGGGAACAGTGGTTGCA
TTGGAACAGACCTGAATAGGAACTTCGCTTCCAGACACTGGTGTGAGAAAGGCGCATCAAATATTTCGTGTTCAGAAATC
TACTGTGGACCTTATCCTGAGTCAGAACCAGAAGTGAAGGCGGTGGCTAATTTCCTGAGAAGAAATACTGACCACATTAA
AGCTTACATCAGCATGCATTCATACTCCCAGAAGATACTGTTTCCATATTCCTACAGCAAAATCAAAAGCAAAGACCACG
AGGAGCTGTCTCTAGTGGCCAGTGAAGCAGTTCGTGCTATTAAGAACATTCACAAAAATATAAGGTATACATATGGCAGT
GGCTCAGAAAGTTTATACCTAGCTCCTGGAGGTTCAGATGATTGGATCTATGATTTGGGCGTCAAATATTCGTTTACAAT
TGAACTTCGAGATACAGGCAATCATGGATTCTTGCTGCCACAGAGTTACATCAGGCCCACTTGTGAAGAAGCTCAGGTGG
CTGTTTCTGAAATAGCTTGGCATGTCATTAGGAATGTT

Alignment

ORF - retro_ogar_1725 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.12 %
• Parental protein coverage: 53.55 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VTYLYGMNERYTDLLNNVDFYVMPLINVDGYDYTWKKDRMWRKNRSLHGNSGCIGTDLNRNFASRHWCEK
          VTYLYGMNERYT.LLNNVDFYVMPLINVDGYDYTWKKDRMWRKNRSLHGNSGCIGTDLNRNFASRHWCEK
Retrocopy VTYLYGMNERYTNLLNNVDFYVMPLINVDGYDYTWKKDRMWRKNRSLHGNSGCIGTDLNRNFASRHWCEK

Parental  GASNISCSEIYCGPYPESEPEVKAVANFLRRNTDHIKAYISMHSYSQKILFPYSYSKIKSKDHEELSLVA
          GASNISCSEIYCGPYPESEPEVKAVANFLRRNTDHIKAYISMHSYSQKILFPYSYSKIKSKDHEELSLVA
Retrocopy GASNISCSEIYCGPYPESEPEVKAVANFLRRNTDHIKAYISMHSYSQKILFPYSYSKIKSKDHEELSLVA

Parental  SEAVRAIKNIHKNIRYTYGSGSESLYLAPGGSDDWIYDLGVKYSFTIELRDTGNHGFLLPQSYIRPTCEE
          SEAVRAIKNIHKNIRYTYGSGSESLYLAPGGSDDWIYDLGVKYSFTIELRDTGNHGFLLPQSYIRPTCEE
Retrocopy SEAVRAIKNIHKNIRYTYGSGSESLYLAPGGSDDWIYDLGVKYSFTIELRDTGNHGFLLPQSYIRPTCEE

Parental  AQVAVSGIAWHVIRNV
          AQVAVS.IAWHVIRNV
Retrocopy AQVAVSEIAWHVIRNV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1725 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000012039	1 retrocopy	retro_ogar_1725 ,