RetrogeneDB ID: retro_ogar_180

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873549.1:4729210..4730185(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000032641
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000016174
• Aliases: None
• Description: None

Sequence

>retro_ogar_180
ATGGGACGGACATCAAAGGACAAGCGTGATGTCTACTACCGCCTGGCCAAGGAAAATGGCTGGCGTGCCCGCAGCGCCTT
CAAACTGCTACAGCTTGATGAACAATTCCAGCTTTTTCAAGGTGTGACACGGGCAGTTGACCTGTGTGCAGCCCCAGGCA
GCTGGAGTCAGGTGCTGAGCCAGAAGATTGGAGGCCAGGGTTGTGGCCATGTGGTGGTGGCTGTGGACCTGCAGGCTATG
GCTCCAATACCAGGGGTGGTACAGATCCAGGGAGATATCACCCAGCTATCCACTGCCAAGGAGATCATCCAGCATTTTGA
GGGCTGCCCTGCGGACCTAGTAGTGTGCGACGGGGCTCCTGATGTAACTGGCCTCCATGATGTTGATGAGTATATGCAGG
CCCAGCTCCTTCTAGCTGCTCTGAACATTGCTACACATGTCTTGAAGCCAGGGGGCTGCTTTGTGGCCAAGATATTCCGA
GGCCGGGATGTGACGCTTCTCTACAGCCAGTTGCGTGTCTTCTTCTCCAGTGTGCTCTGTGCCAAGCCCAGGAGCAGCCG
GAACTCCAGCATTGAGGCCTTTGCTGTCTGTCAGAGTTATGACCCTCCTGCAGGCTTCACTCCAGACTTAACCAGACCCT
TGCTGGACCACTCTTATGACCCAGATTTCAACCAGCTGGATGGTCCCAGCCGCATCATTGTGCCTTTTGTGACCTGTGGG
GACCTGAGCTCCTATGATTCAGATCGCAGCTACCCATTGGATCTAGAGGATGGCTCAGAGTACAAGTACACTCCACCCAC
ACAGCCTCCCATCTCACCATCATACCAGGAGGCTTGCAGGTTGAAGAAGAAGGGGTGGCTGGCCAAGGAAATCCACCCCC
AGCACCACCCCATCAGCAGAGTAGACACATTGCCCCAGCCCCTGGCCACCCCTGAGTCCCACACCCTGCTGGCCCCTGAG
ATGGAAGACAACTGA

Alignment

ORF - retro_ogar_180 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.76 %
• Parental protein coverage: 81.54 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LTQRISGSKETDRKVAEYLRGVWTPDPGVVG-QGH-QQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHD
          L.Q.I.G.......VA..L.....P.PGVV..QG...QLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHD
Retrocopy LSQKIGGQGCGHVVVAVDLQAM-APIPGVVQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHD

Parental  VDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRVFFSSVLCAKPRSSRNSSIEAFAVC
          VDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRVFFSSVLCAKPRSSRNSSIEAFAVC
Retrocopy VDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLRVFFSSVLCAKPRSSRNSSIEAFAVC

Parental  QSYDPPEGFTPDLCRPLLDHSYDPDFNQLDGPSRIIVPFVTCGDLSSYDSDRSYPLDLEDGSEYKYTPPT
          QSYDPP.GFTPDL.RPLLDHSYDPDFNQLDGPSRIIVPFVTCGDLSSYDSDRSYPLDLEDGSEYKYTPPT
Retrocopy QSYDPPAGFTPDLTRPLLDHSYDPDFNQLDGPSRIIVPFVTCGDLSSYDSDRSYPLDLEDGSEYKYTPPT

Parental  QPPISPPYQEACRLKKKGWLAKEIRPQDHPISRVDTLPQPLAAPESHTLLAPEMEDD
          QPPISP.YQEACRLKKKGWLAKEI.PQ.HPISRVDTLPQPLA.PESHTLLAPEMED.
Retrocopy QPPISPSYQEACRLKKKGWLAKEIHPQHHPISRVDTLPQPLATPESHTLLAPEMEDN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_180 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000031829	1 retrocopy	retro_btau_27,
Canis familiaris	ENSCAFG00000015339	1 retrocopy	retro_cfam_544,
Erinaceus europaeus	ENSEEUG00000001469	1 retrocopy	retro_eeur_222,
Echinops telfairi	ENSETEG00000014092	3 retrocopies	retro_etel_1697, retro_etel_1803, retro_etel_1928,
Myotis lucifugus	ENSMLUG00000003977	1 retrocopy	retro_mluc_1329,
Oryctolagus cuniculus	ENSOCUG00000008009	1 retrocopy	retro_ocun_870,
Otolemur garnettii	ENSOGAG00000016174	1 retrocopy	retro_ogar_180 ,
Sorex araneus	ENSSARG00000007091	1 retrocopy	retro_sara_26,