RetrogeneDB ID: retro_ogar_185

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873687.1:575600..576683(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000028259
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: SERBP1
• Ensembl ID: ENSOGAG00000025884
• Aliases: None
• Description: SERPINE1 mRNA binding protein 1 [Source:HGNC Symbol;Acc:17860]

Sequence

>retro_ogar_185
ATGCCGGGGCACCTGCAGGGCGGCTTCGGCTGCGTCGTCTCCAACCGATTCGACCAGTTATTTGACGACGATTCGGACCC
CTTCGAGGTGCTGCAGGCAGCGGAGAACAAGAAAAAAGAAGCCGGTCGGGGCGGCGTCGGAGGCCCCGGGGCGCAGCCCG
GCCCCAGCGCGGCGGGCACACGGCTGCGGGAGGAGCCGCCGCGGGACGCCGAGGAGCCGCCGCCGCCGCCCGCGCTGCCC
CCCAGAGAAGCGGGGAGACGCGCCGGAGGGAGAGCCGAGCCGCAGCTGCAGGGAGAGGGGAAAACTCCTGAGCGGAGACC
CGACCGGCGACCGCCCCGGGAACGAAGGGCTGAAAAGCCGCTTGAAGAAAAGGGGGAAGGAGGCGAGTTCCCCGCGGAGA
GGCCGACGGCTGAGCGGCCGGGCCGGGGCCGCGGGGGCCCGGGGCGAGGGCGAGGGGGCCGCGGGCGCGGGCCGGGCCGG
GCGGACGGGCTGGATGCCCGCGGCAAACGCGAGTTTGACCGGCACAGTGGGAGCGACAGGGCCGGCCTGAAGCCTGAGGA
CAAGCGTGGAGGGAGCGGCTCTCACAACTGGGGGACCGTCGAAGACGAACTCACCGACTTGGATCAGTCGAATGGGACTG
AGGAGCCCCCTGACGGGGACGAGCACCCGGTGGCTGACACCGAAAACAAGGAGAACGAAGTGGAAGAGGACAAGGAAGAG
GGTCCCAAAGAGATGACTTTGGATGAGTGGAAGGCTATTCAAAGTAAGGACCGGGCAAAAGTAGAATTTACTCTCCGAAA
ACCAAACGAAGGGGCCGACGGGCAGTGGAAGAAGGGATTTGTGCTTCACAAATCGAAGAGTGACCAGGCTCATGCTGAAG
ATTCCGTTACGGACCGTCATTGCCGGAAGCCAGCGAATGATATAACGTCGCAGCTGGAAATCAATTTTGGAGACCTTGGT
CGCCCAGGACGTGGTGGCAGAGGAGGAAGAGGTGGGCGAGGGCATGGTGGCCGTCCCACGGACCAGTCAAGTGCTTCAGC
TCCTGATGTGGATGACCCAGAGGCATTCCCGGCTCTGGTTTAA

Alignment

ORF - retro_ogar_185 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.39 %
• Parental protein coverage: 76.68 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIID
          D..E...PP.....E..RR.G.R...QLQGEGK...RRP.RRPPRERR.EKPLEEKGEGGEF...RP...
Retrocopy DAEEPPPPPALPPREAGRRAGGRAEPQLQGEGKTPERRPDRRPPRERRAEKPLEEKGEGGEFPAERPTAE

Parental  RPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSGLKHEDKRGGSGSHNWGTVKDELTDLD
          RP.RGRGG.GRGRGGRGRG.GR.DG.D.RGKREFDRHSGSDR.GLK.EDKRGGSGSHNWGTV.DELTDLD
Retrocopy RPGRGRGGPGRGRGGRGRGPGRADGLDARGKREFDRHSGSDRAGLKPEDKRGGSGSHNWGTVEDELTDLD

Parental  QSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKK
          QSN.TEE.P.G.EHPVADTENKENEVEE.KEEGPKEMTLDEWKAIQ.KDRAKVEF..RKPNEGADGQWKK
Retrocopy QSNGTEEPPDGDEHPVADTENKENEVEEDKEEGPKEMTLDEWKAIQSKDRAKVEFTLRKPNEGADGQWKK

Parental  GFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGRPNRGSRTDKS
          GFVLHKSKS..AHAEDSV.D.H.RKPANDITSQLEINFGDLGRP...GRGGRGGRG..GR...G..TD.S
Retrocopy GFVLHKSKSDQAHAEDSVTDRHCRKPANDITSQLEINFGDLGRP---GRGGRGGRG--GRGHGGRPTDQS

Parental  SASAPDVDDPEAFPAL
          SASAPDVDDPEAFPAL
Retrocopy SASAPDVDDPEAFPAL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_185 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000018538	1 retrocopy	retro_cfam_546,
Callithrix jacchus	ENSCJAG00000017440	2 retrocopies	retro_cjac_1207, retro_cjac_3015,
Homo sapiens	ENSG00000142864	3 retrocopies	retro_hsap_3056, retro_hsap_413, retro_hsap_4695,
Gorilla gorilla	ENSGGOG00000010396	1 retrocopy	retro_ggor_408,
Myotis lucifugus	ENSMLUG00000001424	1 retrocopy	retro_mluc_691,
Otolemur garnettii	ENSOGAG00000025884	1 retrocopy	retro_ogar_185 ,
Pan troglodytes	ENSPTRG00000023560	2 retrocopies	retro_ptro_1985, retro_ptro_317,
Tupaia belangeri	ENSTBEG00000003689	4 retrocopies	retro_tbel_1004, retro_tbel_1331, retro_tbel_2427, retro_tbel_532,