RetrogeneDB ID: retro_ogar_189

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873781.1:996357..997266(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000000097
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000013005
• Aliases: None
• Description: None

Sequence

>retro_ogar_189
ATGTCGTACGCAAGGTTCGATTCCTCAGACCGCTCCGCCTGGTACGTGGGACCTGTATCTCGCCGGGAAGCGCACACCCT
GCTCCAGGGCCAGCGCTGTGGCACGTTCCTAGTCCGCGAGTCGTCCACCCGCCCGGGGAACTACGTGTTGTCTGTGTCCG
AGGACTCACAGGTCTCTCACTACCTCATCAACTCACTGCCCAAACGGCGTTTTAAGATTGGGCATCTAGAGTTCGACCAT
ATGCCTGCCCTGCTGGAGTTTTACAAGACCCACTACCTGAACACTACCACCCTCATCGAGCCTGTGCCCAGGTATCCAAG
CCCACAAATGGGATCTGGGTCCACACCTACCCTGCGTACAGCAGGAGGAAATGTGGAATATGTATGGACTCTTTATGATT
TTCTTGGGAATGATGCCGAAGACTTGCCCTTTAAAAGGGGTGAGGTCCTGATGATAATAGAGAAGCCTGAAGAACAGTGG
TGGACTGCCCGGAACAGGGATGGCCGGGTTGGGATGATTCCTGTCCCTTATGTTGCAAAGCTTGTGAGAGCCTCGACACA
TGGAAAGCATGGAAGTAGGAATTCCAACACTTGTGGAATCCCAGAACCTGCTCATGCATACACTCAACCTCAGACCGCAA
CTCCTCAACCCGCGGTTTCCAGTACTCCTGGGGCAGCTATCAACTCACCATCCACACAGAATGGAGCTGACTCTGCGAAA
GCAATCCAGGAAAGAGTATCCTGTGCTTATGACAAGACCGCCTTGGCATTAGAGGTTGGTGACATTGTGAAAGTCACAAG
GATGAATACAAATGGCCAGTGGGAAGGCGAAGTGATTGGGCGCAAAGGGCTTTTCCCCGTTACACACGTCACAATCATTG
ACCCTCAAAACCCAGATGAAAACAAGTGA

Alignment

ORF - retro_ogar_189 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.19 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRR
          MS.ARFDSSDRSAWY.GPVSR.EA.T.LQGQR.G.FLVR.SST.PG.YVLSVSE.S.VSHY.INSLP.RR
Retrocopy MSYARFDSSDRSAWYVGPVSRREAHTLLQGQRCGTFLVRESSTRPGNYVLSVSEDSQVSHYLINSLPKRR

Parental  FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEENLEYVRTLYDFLGNDAE
          FKIG..EFDH.PALLEFYK.HYL.TTTLIEP.PRYPSP.MGS.S.P.L.TA..N.EYV.TLYDFLGNDAE
Retrocopy FKIGHLEFDHMPALLEFYKTHYLNTTTLIEPVPRYPSPQMGSGSTPTLRTAGGNVEYVWTLYDFLGNDAE

Parental  DLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQP
          DLPFK.GE.L.IIEKPEEQWW.ARN.DGRVGMIPVPYV.KLVR.S.HGKHG.RNSN..GIPEPAHAY.QP
Retrocopy DLPFKRGEVLMIIEKPEEQWWTARNRDGRVGMIPVPYVAKLVRASTHGKHGSRNSNTCGIPEPAHAYTQP

Parental  QTTTPLPAVSSTPGASINPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN
          QT.TP.PAVSSTPGA.IN..PSTQNG...AKAIQ.RV.CAYDKTALALEVGDIVKVTRMN.NGQWEGEV.
Retrocopy QTATPQPAVSSTPGAAINS-PSTQNGADSAKAIQERVSCAYDKTALALEVGDIVKVTRMNTNGQWEGEVI

Parental  GRKGLFPFTHVKIFDPQNPDENE
          GRKGLFP.THV.I.DPQNPDEN.
Retrocopy GRKGLFPVTHVTIIDPQNPDENK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_189 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000013005	1 retrocopy	retro_ogar_189 ,