RetrogeneDB ID: retro_ogar_1994

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873579.1:1295063..1296666(-)
• Located in intron of: ENSOGAG00000007843

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C17orf80
• Ensembl ID: ENSOGAG00000013150
• Aliases: None
• Description: chromosome 17 open reading frame 80 [Source:HGNC Symbol;Acc:29601]

Sequence

>retro_ogar_1994
GACCCCTGGGCTTATGAGTCCAACCCAGGTACACTCCTATGTGCTAAAAAATTGAAAGGGCCAATCAAAGATTTAATGAA
ACCCAAATGGATGGAATTAGAGACAGAAAGTGAGAAAAGAAATTCTAAATTGATAATGGACAAACCAGAACAGACAATTC
AGTCCTTCCCACTACCAGCTGTTGGTTTGGATACTACAGAGGCAGCTTAAAGACATCAAGAATCAAATTCAGCTCTCCTC
CAAAATGTTAAAAAAGTCTGAACCAATGACTACTTTCCAAGGAGAAACCAAGGGTCAGTTTTATGTACCAGGGAACACCT
CTCCTAAGAGAGAAGTTGCCAGAGATTTGTCTAAATCAGGGGAAAGCAGATGTAATCCTTCAGAAGCTGAAACATCTTTC
CTGGTTGATTCAATGGAACTTTCTTTGTCAAATCAAGAAAGAAAATATTCCTCAGCCATACCTAATAATGTACAAACCAC
TTCTGATCTAAAATTGGACAAAATTAATCCCCAAAGATAGGAGCTTCTAGTAAAATTACTAGATGTGCCTATTGGTGACA
ATTACAGTTCTCCAAAGAATCTGAGTGATGAAGTTAAAAGAATAAGAACATCATTGAGCAATGAAAGAGATTCCAAAGGT
GGGGATCACCTCTCAGGAGCCTCTACTGATGTTAAAGACACTGAGACTTGGGAAAAGGACATAGAATCACTAATTTTAAG
CCTTAAAATTAGCTCATTGGGTAAAATCCGAGTCATGGAGAACCAAGAAAAAGGACTTAGCCTTGGAGCAGAGATGTGTG
GGAGGAACGGAAATGCAGAGAAAAGTGTGTCTGAGACAGAAAGGCAGAAATGGACTGCCATCAGCAATGGCTCTGGAATT
TCAAAACCTACGATTCAGCCACAGAGGAGGAATCTGAAGATGGAGGACATTTAAATTTGTACATTCCAAGGGAGACAACT
TACAATGAATTTTTTCTGTGTCACAGGCAAGTAGTCAAAAAATCTTGCCTCTCTGGCTACACAGTTTATTCAAGAAGAAA
AAGCAGAAGCCAGGGTCATAATCGAGTACCCGATACAAAGGCCTTAATGGAGAAGAAGGAGCCAGTTTCTCTGGAGCCCA
AATCTGGCTGTCAGCTTCACAAATTGCACGTTGGATACCAACAACCTTTCCATTCAGCCCTGCATCACACATCTAAGAGC
CCCTTCCTCAATCATGTTGCAACTGCTAATAGAAGGATGCCCAGCTCCATGGGGCTGGAGTGGTTTCCAGAACTCTATCC
TGGTTATCTTGGACTAGGGGTGTTGTCAAAGAAGCCTCAGTATTGGCATGAAGTAGCCCAGAAGCCACAGCTCATCAGTC
CCCAGGAGAGGAAAACACAAGTTCCTTTGTTGGACAGAACTTCAGCTGATATAAGGAGTGTGGAATCCCCAACCTGGTTT
ACAATCTCCAACTTCTCTCTAAGGAGGCTTTTGGAAGCTGTACAAAAAGGCTGGCTTGAGGTGCAGCACCACCATCAGGA
AGAGCGGAGTCGGCAGCATCATGATGCTCTTCATGGGGTACTTCATCCTGTGCTATAGCTGGAGTTTCAGGCATTTGAAG
CTG

Alignment

ORF - retro_ogar_1994 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.88 %
• Parental protein coverage: 88.87 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  DRKAYESNPGTLPRAKKLKGPIKDLMKAKRMELETESEKRNSKLIMDKPEQTIQSFPLPAVGLERASTTE
          D..AYESNPGTL..AKKLKGPIKDLMK.K.MELETESEKRNSKLIMDKPEQTIQSFPLPAVGL....TTE
Retrocopy DPWAYESNPGTLLCAKKLKGPIKDLMKPKWMELETESEKRNSKLIMDKPEQTIQSFPLPAVGLD---TTE

Parental  AD-KDIKNQIQLSSKMLKKSEPKTTFQGETKGQFYAPENTSPKREVARDLPKSGESRWNPSEAEASLLVG
          A..KDIKNQIQLSSKMLKKSEP.TTFQGETKGQFY.P.NTSPKREVARDL.KSGESR.NPSEAE.S.LV.
Retrocopy AA>KDIKNQIQLSSKMLKKSEPMTTFQGETKGQFYVPGNTSPKREVARDLSKSGESRCNPSEAETSFLVD

Parental  SMELSLSDQERKYSSAVPNNVQTTSDLKLDKINPQRQELLVKLLDVPIGDNYSSPKNLSGEVKRVRTSLS
          SMELSLS.QERKYSSA.PNNVQTTSDLKLDKINPQR.ELLVKLLDVPIGDNYSSPKNLS.EVKR.RTSL.
Retrocopy SMELSLSNQERKYSSAIPNNVQTTSDLKLDKINPQR*ELLVKLLDVPIGDNYSSPKNLSDEVKRIRTSL-

Parental  SNERDSRGRDHLSGASTDVKDTETQEKDIESLILSLKINSLGKIRVMENQEKGLSLGVEMGGRKGNTEKS
          SNERDS.G.DHLSGASTDVKDTET.EKDIESLILSLKI.SLGKIRVMENQEKGLSLG.EM.GR.GN.EKS
Retrocopy SNERDSKGGDHLSGASTDVKDTETWEKDIESLILSLKISSLGKIRVMENQEKGLSLGAEMCGRNGNAEKS

Parental  VSETERQKWTAMSNGSG-NFKTDGSAPEKESEVGGHLNLYIPRETTSNGF-FSVSQASSQ-KSLVSLGTQ
          VSETERQKWTA.SNGSG.NFKT..SA.E.ESE.GGHLNLYIPRETT.N.F.FSVSQASSQ.K.L.SL.TQ
Retrocopy VSETERQKWTAISNGSG<NFKTYDSATEEESEDGGHLNLYIPRETTYNEF<FSVSQASSQ<KNLASLATQ

Parental  FIQEEKAEA-SGDNRVPDIKALMEKKEQVSLEPKSGSQFHELHVGCQHPFHSALHHTSKSPFLSHVATAD
          FIQEEKAEA..G.NRVPD.KALMEKKE.VSLEPKSG.Q.H.LHVG.Q.PFHSALHHTSKSPFL.HVATA.
Retrocopy FIQEEKAEA<QGHNRVPDTKALMEKKEPVSLEPKSGCQLHKLHVGYQQPFHSALHHTSKSPFLNHVATAN

Parental  RKMPSSMGLEWFPELYPGYLGLGVLPGKPQYWHELAQKPQLVSPQEGRFSQGTVVPLLERSSTDIRSVES
          R.MPSSMGLEWFPELYPGYLGLGVL..KPQYWHE.AQKPQL.SPQE......T.VPLL.R.S.DIRSVES
Retrocopy RRMPSSMGLEWFPELYPGYLGLGVLSKKPQYWHEVAQKPQLISPQERK----TQVPLLDRTSADIRSVES

Parental  PTWLTTSNFSLRRLLEAVQKGW-LRCNTTIRKSGVGSITMLFTGYFILCCSWSFRHLIL
          PTW.T.SNFSLRRLLEAVQKGW.LRC.TTIRKSGVGSI.MLF.GYFILC.SWSFRHL.L
Retrocopy PTWFTISNFSLRRLLEAVQKGW>LRCSTTIRKSGVGSIMMLFMGYFILCYSWSFRHLKL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1994 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000013150	2 retrocopies	retro_ogar_1561, retro_ogar_1994 ,