RetrogeneDB ID: | retro_ogar_2054 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873585.1:2259299..2259911(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASF1A | ||
Ensembl ID: | ENSOGAG00000034346 | ||
Aliases: | None | ||
Description: | anti-silencing function 1A histone chaperone [Source:HGNC Symbol;Acc:20995] |
Percent Identity: | 78.64 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKII-YVGSAESEEYDQVLDSVL-VGPVPAG |
MAKVQ..NVVVLDNPSPFYNPFQFEITF.C.EDLSED.EWKII.YVGSA.S.EY.Q.LDS.L..GPVPAG | |
Retrocopy | MAKVQMHNVVVLDNPSPFYNPFQFEITFKCTEDLSEDSEWKII>YVGSADSGEYGQGLDSML<RGPVPAG |
Parental | RHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRN |
RHMFV.QADAP.PGL...A.A.G.TVVLI.CTY.GQEFIR.G..VNNE.TETELRENPPVKPDFSK.QRN | |
Retrocopy | RHMFVLQADAPDPGLRTEAGAAGITVVLISCTYQGQEFIRFGCCVNNEHTETELRENPPVKPDFSKFQRN |
Parental | ILASNPRVTRFHINWEDNTEKLEDAESSNPNLQSLLSTDALPSASKGWSTSENSLNVMLESHMDCM |
.L.SNPRV.RFHI.WEDNT..LED.ESS.PN.QS.LSTD.LPSA.KGWST.ENSLNV...SHMDCM | |
Retrocopy | TLPSNPRVIRFHIHWEDNTGQLEDSESSGPNPQSRLSTDELPSAPKGWSTPENSLNVSQGSHMDCM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013007 | 1 retrocopy | |
Felis catus | ENSFCAG00000023561 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000013053 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000034346 | 1 retrocopy |
retro_ogar_2054 ,
|
Ochotona princeps | ENSOPRG00000004979 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000592 | 2 retrocopies |