RetrogeneDB ID: retro_ogar_2108

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873591.1:9802238..9803404(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZFP69
• Ensembl ID: ENSOGAG00000009257
• Aliases: None
• Description: ZFP69 zinc finger protein [Source:HGNC Symbol;Acc:24708]

Sequence

>retro_ogar_2108
ATGCCACAGCAGCTGCTGGTCACCCTGACCACTAAAGCCAGCACCTGGGTGAAGTTGCACCATCCAAAGAAGGGCAAGGA
GGGGGCACCCCAGGGGGAAGATGTGACCAAAATGTTTGAAGGAGAAGTTCTGTTGTCTCAGGATATTAATGTGACCCAAG
GAGAAAACTTAGAGAACAAAATGACCTCTGTACCCCCAGCATTAGAATACCAAGACCTGCTAACCTTCAACAACATATCT
ATTGACTTCACCCAGGATCAGTGGGGGCACTGGCCTCTGCTCACCAGGATTTGTACTGAGAGGTGATGCTAGAGAACTAC
AGGAACTTGGTGTCAGTGGGATATCAACTTTCTAAACCTAGTGTGATTTCCCAGTTGAAGAAAGGAGAAGAACCATGGAT
GACAGAGAAAGAAGGCCCAGAAGATCTCAGTTCGGACTTGAAGAGTAAAAGAGAAACCAATGAATCAAAGAATTCCATTT
CACAAGAACAATTATATCATGGCATTTTGATGGAAGGGGTCATGAAAGATGATATCATTTATTCCACATTGAGAAAAGTC
TCCAAATATGATGATGTGTTATAAAGGCACGGGCAAACCTGTGTGAGAGATATGAGACAAACCATCTTGATCGATAAAAA
GGCCAAGAAACAAACAAATTTGGGGGAAATATCATTGAGAGTTCAAATGTTATTACAGAATGGAGGCATCATAAATGTGA
TACACCTAGAAAGAGGAACAAATACAAATTAGATTTGATTAATCATACAACAAGTTACATAAACCAAAAACCTATGAACA
TAATATATGCAAAAAATATTTTCAAACAACCCATTCACCTTACTGAACACATGAGAATTCATACTGGTGAGAAACCTTTC
AGATGTAAAGAATATGGAAGGGCCTTTAATCAAAGTGCAACAGTACACATCAGAGAATTCATACTGGTGAGAAGCCCTTT
GAATACAACCAGTGCTGCCAAGTCTTCAGACATCGCTCATCATTTAATCAGCATTATAGAACTCACACTGGGGAGAAACC
CTACATGTGTGATAAATGTCAGAAAGCTTTTCAGCCAGAACATTACCTTGATCGAACATTTGAGGACTCATTCTGGAGAG
AAACCTTTCCCTTGCAATGAATGTGGGGAAAACCTTTCAACAGATA

Alignment

ORF - retro_ogar_2108 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76. %
• Parental protein coverage: 75. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 7

Retrocopy - Parental Gene Alignment:

Parental  MPQQLLITLPTKANTWVKLHHPKKAKEGAPRWEDVTKMFEGEILLSQDADAAQGESLEDEMTSVPPAAES
          MPQQLL.TL.TKA.TWVKLHHPKK.KEGAP..EDVTKMFEGE.LLSQD....QGE.LE..MTSVPPA.E.
Retrocopy MPQQLLVTLTTKASTWVKLHHPKKGKEGAPQGEDVTKMFEGEVLLSQDINVTQGENLENKMTSVPPALEY

Parental  QELLTFNDISIDFSQDEWGQ-LAPAHQDLYREVMLENYRNLVSVGYQLSKPSVISHLEKGEEPWMTEKEG
          Q.LLTFN.ISIDF.QD.WG..LA.AHQDLY.EVMLENYRNLVSVGYQLSKPSVIS.L.KGEEPWMTEKEG
Retrocopy QDLLTFNNISIDFTQDQWGH<LASAHQDLY*EVMLENYRNLVSVGYQLSKPSVISQLKKGEEPWMTEKEG

Parental  PADPSSGLKSKTETNESTAKNSISEEQLYHGILMEKVMKDDIIYSTLRKVSQYDDTLEMHQESCVRDVRQ
          P.D.SS.LKSK.ETNES..KNSIS.EQLYHGILME.VMKDDIIYSTLRKVS.YDD.L..H...CVRD.RQ
Retrocopy PEDLSSDLKSKRETNES--KNSISQEQLYHGILMEGVMKDDIIYSTLRKVSKYDDVL*RHGQTCVRDMRQ

Parental  TILTHKKRGQKTNKFGE-NIIMSSNVLIEQRHHKCDTTRKRNKYKLDLTNHPTSYI-RPKTYECNICEK-
          TIL..KK....TN..GE.NII.SSNV..E.RHHKCDT.RKRNKYKLDL.NH.TSYI..PKTYE.NIC.K.
Retrocopy TILIDKKAKKQTN-LGE<NIIESSNVITEWRHHKCDTPRKRNKYKLDLINHTTSYI<KPKTYEHNICKK>

Parental  IFKQPIHLTEHMRIHTGEKPFRCKECGRAFSQSASLSTHQRIHTGEKPFECEECGKT-FRHRSSLNQHHR
          IFKQPIHLTEHMRIHTGEKPFRCKE.GRAF.QSA.......I.....P.......K..FRHRSS.NQH.R
Retrocopy IFKQPIHLTEHMRIHTGEKPFRCKEYGRAFNQSATVHIREFILV-RSPLNTTSAAKS<FRHRSSFNQHYR

Parental  THTGEKPYVCDKCQKA-FSQNISLVQHLRTHSGEKPFTCNEC-GKTFRQI
          THTGEKPY.CDKCQKA.FSQNI.L..HLRTHSGEKPF.CNEC.GKTF.QI
Retrocopy THTGEKPYMCDKCQKA>FSQNITLIEHLRTHSGEKPFPCNEC>GKTFQQI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2108 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000009257	1 retrocopy	retro_ogar_2108 ,