RetrogeneDB ID: retro_ogar_2132

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873594.1:1173144..1173558(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C3orf83
• Ensembl ID: ENSOGAG00000031425
• Aliases: None
• Description: chromosome 3 open reading frame 83 [Source:HGNC Symbol;Acc:40375]

Sequence

>retro_ogar_2132
AGGGAGCATGCTGGGAGGTCTGATCTTCATGTTGGAATAACTAACACAAATGGAGTTGTGTATAATTACAACAAGCATGG
TGTCCAGCGTGATGACTCAGGGTCGGAGCAGAGCATAAGCTTCCCATTACTACAGCCCAACATGTACGGACTGATGGACC
AGTGGGACAAGTACCTGGAAGACTTCTACACCTCAGGGCTCTGGCTGCCCTACAGGTACAAAGAAGACAGTCACAACCTC
TACAGTTATGCCCTCACCTTCATTAACTGCTTCCTGACCACAGAAGGCAAAGAGCAACTGGACAAGAGTGAATTCACAGA
GAGATACGTGGTCCGGAGGACAAGGCTGGCTTCCAAGTACATCACAGTCCACCGGCCAATAGAAGAGCAGGGCTTCTACG
TGACTGACCTTCCC

Alignment

ORF - retro_ogar_2132 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.13 %
• Parental protein coverage: 67.32 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RDYDGRSDLHVGITNTNGAVYNYNMHGVQRDNSGWEQSISIPLLQPNMYGLMDQWDKYLEDFSTSGSWLP
          R...GRSDLHVGITNTNG.VYNYN.HGVQRD.SG.EQSIS.PLLQPNMYGLMDQWDKYLEDF.TSG.WLP
Retrocopy REHAGRSDLHVGITNTNGVVYNYNKHGVQRDDSGSEQSISFPLLQPNMYGLMDQWDKYLEDFYTSGLWLP

Parental  HRYKEDSHNCYSYALTFINCVLTTEGKEQLDKSEFTERYVVPRTRLASKYITVHRAIEEQGFYVTDLP
          .RYKEDSHN.YSYALTFINC.LTTEGKEQLDKSEFTERYVV.RTRLASKYITVHR.IEEQGFYVTDLP
Retrocopy YRYKEDSHNLYSYALTFINCFLTTEGKEQLDKSEFTERYVVRRTRLASKYITVHRPIEEQGFYVTDLP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2132 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000031425	1 retrocopy	retro_ogar_2132 ,