RetrogeneDB ID: | retro_ogar_217 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873706.1:1931324..1932920(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSOGAG00000027127 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CCT6B | ||
| Ensembl ID: | ENSOGAG00000009862 | ||
| Aliases: | None | ||
| Description: | chaperonin containing TCP1, subunit 6B (zeta 2) [Source:HGNC Symbol;Acc:1621] |
Retrocopy-Parental alignment summary:
>retro_ogar_217
ATGGCGGCCGTGAAGACCCTGAACCCTAAGGCCGAGGTGGCCCGAGCCCAGGCGGCGCTAGCGGTGAACATTAGCGCGGC
TCGGGGGCTGCAGGACGTGCTGAGGACCAACTTGGGGCCTAAAGGCACCATGAAGATGCTGGTTTCTGGCGCTGGAGACA
TCAAGCTTACCAAAGACGGCAATGTACTGCTTCACGAAATGCAAATTCAACACCCAACAGCCTCCTTAATAGCAAAAGTG
GCAACAGCCCAGGATGACATAACTGGTGATGGTACTACTTCCAATGTCCTAATCATTGGAGAGCTGCTGAAACAGGCGGA
TCTCTACATTTCTGAAGGTCTTCATCCCAGAATAGTCACTGAAGGATTTGAAGCTGCAAAGGAAAAGGCCCTTAACTTTT
TGGAACAAGTCAAAGTAAGCAGAGAGATGGACAGGGAAATACTTATAGATGTGGCCAGAACATCTCTTCGAACTAAAGTT
CATGCTGAACTTGCAGATGTCTTAACAGAGGCTGTTGTGGATGCCGTTTTGGCCATTAAAAGAAAAGATGAGCCTATTGA
CCTCTTCATGGTTGAGATCATGGAGATGAAACATAAATCTGAAACTGATACAAGCTTAATCAGAGGGCTTGTTTTGGACC
ATGGAGCCCGGCATCCTGATATGAAGAAAAGAGTAGAAGATGCGTACATCCTCACGTGCAATGTGTCATTAGAATATGAA
AAAACAGAAGTGAATTCTGGCTTTTTTTACAAGAGTGCAGAAGAGAGAGAGAAACTAGTAAAAGCGGAAAGAAAATTCAT
TGAAGATAGAGTTAAAAAAATAATAGAACTGAAAAAGAAAGTCTGTGGTGATTCAGATAAAGGATTTGTTGTTATTAACC
AAAAGGGAATTGACCCCTTTTCCTTAGATGCTCTTGCAAAAGAAGGCATAGTAGCTCTGCGCAGGGCTAAAAGGAGAAAT
ATGGAGAGGCTGACTCTTGCTTGTGGTGGGATAGCTCTAAATTCTTTTGATGACCTAAATCCTGACTGTTTGGGACATGG
GGGACTTGTTTATGAGTATACATTGGGAGAAGAGAAGTTCACCTTTATTGAGAAATGTAACAACCCTCGCTCTGTCACAT
TACTGGTCAAAGGACCAAATAAGCACACACTCACTCAAATCAAAGATGCAATAAGAGATGGCTTGAGGGCTGTCAAAAAT
GCTATTGATGATGGCTGTGTGGTTCCGGGTGCTGGTGCAGTAGAAGTGGCGATGGCAGAAGCCCTGGTGAAATACAAGCA
CAGTGTAAAGGGCCAAGCCCAACTTGGAGTCCAGGCATTTGCTGATGCATTGCTCATTATTCCAAAGGTTCTTGCTCAGA
ACTCTGGTTTTGACCTTCAGGAAACATTAGTTAAAATTCAGGCTGAACATTCAGAATCAGGTCAACTTGTGGGTGTGGAC
TTGAACACAGGTGAGCCAATGGTAGCAGCAGAAGTAGGCGTATGGGATAACTATTGTGTAAAGAAACAGCTTCTTCACTC
CTGCACTGTGATTGCTACCAACATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTCTCTGAAAGGCTGA
ORF - retro_ogar_217 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.57 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MAAIKAVNAKAEVARAQAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQ |
| MAA.K..N.KAEVARAQAALAVNI.AARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQ | |
| Retrocopy | MAAVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQ |
| Parental | HPTASLIAKVATAQDDVTGDGTTSNVLIIGELLRQADLYISEGLHPRIIAEGLEVAKIKALEVLEEIKVQ |
| HPTASLIAKVATAQDD.TGDGTTSNVLIIGELL.QADLYISEGLHPRI..EG.E.AK.KAL..LE..KV. | |
| Retrocopy | HPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIVTEGFEAAKEKALNFLEQVKVS |
| Parental | KDMERTILLDVARTSLQTKVHVELADILTEVVLAACLEFSRPGPGSNLPAPVYMASALTTEYRCPSELEL |
| ..M.R.IL.DVARTSL.TKVH.E....L..V...A.............P....M...............L | |
| Retrocopy | REMDREILIDVARTSLRTKVHAE----LADVLTEAVVDAVLAIKRKDEPIDLFMVEIMEMKHKSETDTSL |
| Parental | IRGLVLDHGVRHPDMKKRVEDAFILTCNVSLEYEKTEVSSGFFYKTAEEKEKLVKAERKFIDNRVQKIID |
| IRGLVLDHG.RHPDMKKRVEDA.ILTCNVSLEYEKTEV.SGFFYK.AEE.EKLVKAERKFI..RV.KII. | |
| Retrocopy | IRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIE |
| Parental | LKDRVCAELDKGFVVINQKGIDPFSLDTLAKHGIVALRRAKRRNMERLSLACGGIPVNSLEDLHIDCLGH |
| LK..VC...DKGFVVINQKGIDPFSLD.LAK.GIVALRRAKRRNMERL.LACGGI..NS..DL..DCLGH | |
| Retrocopy | LKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGIALNSFDDLNPDCLGH |
| Parental | ADLVYEYTLFNHLDFLFFQQCLGVNGLHCLIFGAFQKVCLRGKDAITWRVVPIVSFLPIGCVVPGAGAAE |
| ..LVYEYTL.....F.F...C........L..G.........KDAI.............GCVVPGAGA.E | |
| Retrocopy | GGLVYEYTL-GEEKFTFIEKCNNPRSVTLLVKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVE |
| Parental | VAIAEALLVYKHSIKGRARLGVQAFADALLIIPKVLAQNSGYDPQETLVKVQAEHLDSKQLVGIDLNTGE |
| VA.AEAL..YKHS.KG.A.LGVQAFADALLIIPKVLAQNSG.D.QETLVK.QAEH..S.QLVG.DLNTGE | |
| Retrocopy | VAMAEALVKYKHSVKGQAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKIQAEHSESGQLVGVDLNTGE |
| Parental | PMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG |
| PMVAA..GVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG | |
| Retrocopy | PMVAAEVGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_217 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Canis familiaris | ENSCAFG00000018298 | 1 retrocopy | |
| Otolemur garnettii | ENSOGAG00000009862 | 1 retrocopy |
retro_ogar_217 ,
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