RetrogeneDB ID: | retro_ogar_2358 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873614.1:6536025..6536939(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MICU2 | ||
| Ensembl ID: | ENSOGAG00000007540 | ||
| Aliases: | None | ||
| Description: | mitochondrial calcium uptake 2 [Source:HGNC Symbol;Acc:31830] |
Retrocopy-Parental alignment summary:
>retro_ogar_2358
GCCAGAGCAGCAGGTGCCTGGCATGACAGCCCTGTGAATGTTGCTGTGCAAAAGGGCACTCTCACTGTCTTAGCTAAGAA
AAATGTTGATCCTTGCATAGCAGAGAAATCATCTCTTCATAAACAGCACTTCATGCATTGTTCTTAACTGGAACAGGAAG
GAGACTATTATATGACACCACGAGACTTCCTCTTTTCAGAAAAGTTTGAGCAAGTGAAGGTAAAACTTCAATCAAGAAGC
TGACAAAAGAGGATATTGAGGATGCACTGGCAGGAATCCAAACAGCTGGTTGTGGATCAACTTTTTTTAGAGACCTTGGT
GATAAAGGGCTAATTTCATATACCAAACATCTTTTCTTGCTTACAATCTTCACTAAGCCCCATTCTGGGTTTCATGTTGC
TTTTAAAATGCTGAATGCAGATGGTAATTATATGATTAAAAAAAAGGAATTTTATAAGCTGCCGAAAATCATAAGTAAAC
AGGATGACTCAATGACAATGAAAACCAATAAAACAGAATATCAGGAATCAACAGTGAAAGAACCTGAAATTAAGGCAACC
CTTCAGATGTGTTTCTTTGGGGAAAAAAAGGAGAAACAAAACTTCATTACTAAGAATTTTAAAGATTTATGGAAAATTTA
CAAACAGAAATTCAAGAAATGGAACTTGTTCAGTTTTCTAAAGGCTTGAATTTTATGAGAAAAGAAGACTTTGTAGAGTG
GCTACTTTTTTTCACTAACACTGATAATAAAGACATTCACTTGAAAAAATGTGGGAAGAGCTGTCAGCAGGAGAGAGCAT
TAGTTTGGATGAGTTCAAGTCATTTTGCCATTTTACAACCCAGTTGGAAGAGTTTGTTATTGCCATGCAAATGTTTGTTT
AGCTCATCACCCTGTCAGACTAGTGGAGTTTAAG
ORF - retro_ogar_2358 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 76.45 % |
| Parental protein coverage: | 70.6 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 4 |
Retrocopy - Parental Gene Alignment:
| Parental | AGAAAAWHHSRVNVAAREGSLTVSAKKNADPGVVDKSSLRKQRFMQFSSLEHEGEYYMTPRDFLFSVMFE |
| A.AA.AWH.S.VNVA...G.LTV.AKKN.DP....KSSL.KQ.FM..S.LE.EG.YYMTPRDFLFS..FE | |
| Retrocopy | ARAAGAWHDSPVNVAVQKGTLTVLAKKNVDPCIAEKSSLHKQHFMHCS*LEQEGDYYMTPRDFLFSEKFE |
| Parental | QV-ERKTSVKKLTKKDIEDALAGIQTAGYGSTFFRDLGDKGLISYTEYLFLLTILTKPHSGFHVAFKMLD |
| QV.E.KTS.KKLTK.DIEDALAGIQTAG.GSTFFRDLGDKGLISYT..LFLLTI.TKPHSGFHVAFKML. | |
| Retrocopy | QV<EGKTSIKKLTKEDIEDALAGIQTAGCGSTFFRDLGDKGLISYTKHLFLLTIFTKPHSGFHVAFKMLN |
| Parental | ADGNEMIEKKEFYKLQKIISKQDDLMTVKINETEYQEPTVKEPEIKTTLQMHFFGKKGERK-LHYKEFR- |
| ADGN.MI...EFYKL.KIISKQDD.MT.K.N.TEYQE.TVKEPEIK.TLQM.FFG.K.E......K.F.. | |
| Retrocopy | ADGNYMIXXXEFYKLPKIISKQDDSMTMKTNKTEYQESTVKEPEIKATLQMCFFGEKKEKQNFITKNFK< |
| Parental | RFMESLQTEIQEMEFLQFSKGLNFMRKEDFAEWLLFFTNTDNKDIYWK-NVREKLSAGESISLDEFKSFC |
| RFME.LQTEIQEME..QFSKGLNFMRKEDF.EWLLFFTNTDNKDI..K....E.LSAGESISLDEFKSFC | |
| Retrocopy | RFMENLQTEIQEMELVQFSKGLNFMRKEDFVEWLLFFTNTDNKDIHLK<KMWEELSAGESISLDEFKSFC |
| Parental | HFTTHLEDFAIAMQMF-SLAHRPVRLAEFK |
| HFTT.LE.F.IAMQMF..LAH.PVRL.EFK | |
| Retrocopy | HFTTQLEEFVIAMQMF<CLAHHPVRLVEFK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2358 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000007540 | 1 retrocopy |
retro_ogar_2358 ,
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