RetrogeneDB ID: retro_ogar_2358

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873614.1:6536025..6536939(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MICU2
• Ensembl ID: ENSOGAG00000007540
• Aliases: None
• Description: mitochondrial calcium uptake 2 [Source:HGNC Symbol;Acc:31830]

Sequence

>retro_ogar_2358
GCCAGAGCAGCAGGTGCCTGGCATGACAGCCCTGTGAATGTTGCTGTGCAAAAGGGCACTCTCACTGTCTTAGCTAAGAA
AAATGTTGATCCTTGCATAGCAGAGAAATCATCTCTTCATAAACAGCACTTCATGCATTGTTCTTAACTGGAACAGGAAG
GAGACTATTATATGACACCACGAGACTTCCTCTTTTCAGAAAAGTTTGAGCAAGTGAAGGTAAAACTTCAATCAAGAAGC
TGACAAAAGAGGATATTGAGGATGCACTGGCAGGAATCCAAACAGCTGGTTGTGGATCAACTTTTTTTAGAGACCTTGGT
GATAAAGGGCTAATTTCATATACCAAACATCTTTTCTTGCTTACAATCTTCACTAAGCCCCATTCTGGGTTTCATGTTGC
TTTTAAAATGCTGAATGCAGATGGTAATTATATGATTAAAAAAAAGGAATTTTATAAGCTGCCGAAAATCATAAGTAAAC
AGGATGACTCAATGACAATGAAAACCAATAAAACAGAATATCAGGAATCAACAGTGAAAGAACCTGAAATTAAGGCAACC
CTTCAGATGTGTTTCTTTGGGGAAAAAAAGGAGAAACAAAACTTCATTACTAAGAATTTTAAAGATTTATGGAAAATTTA
CAAACAGAAATTCAAGAAATGGAACTTGTTCAGTTTTCTAAAGGCTTGAATTTTATGAGAAAAGAAGACTTTGTAGAGTG
GCTACTTTTTTTCACTAACACTGATAATAAAGACATTCACTTGAAAAAATGTGGGAAGAGCTGTCAGCAGGAGAGAGCAT
TAGTTTGGATGAGTTCAAGTCATTTTGCCATTTTACAACCCAGTTGGAAGAGTTTGTTATTGCCATGCAAATGTTTGTTT
AGCTCATCACCCTGTCAGACTAGTGGAGTTTAAG

Alignment

ORF - retro_ogar_2358 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.45 %
• Parental protein coverage: 70.6 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  AGAAAAWHHSRVNVAAREGSLTVSAKKNADPGVVDKSSLRKQRFMQFSSLEHEGEYYMTPRDFLFSVMFE
          A.AA.AWH.S.VNVA...G.LTV.AKKN.DP....KSSL.KQ.FM..S.LE.EG.YYMTPRDFLFS..FE
Retrocopy ARAAGAWHDSPVNVAVQKGTLTVLAKKNVDPCIAEKSSLHKQHFMHCS*LEQEGDYYMTPRDFLFSEKFE

Parental  QV-ERKTSVKKLTKKDIEDALAGIQTAGYGSTFFRDLGDKGLISYTEYLFLLTILTKPHSGFHVAFKMLD
          QV.E.KTS.KKLTK.DIEDALAGIQTAG.GSTFFRDLGDKGLISYT..LFLLTI.TKPHSGFHVAFKML.
Retrocopy QV<EGKTSIKKLTKEDIEDALAGIQTAGCGSTFFRDLGDKGLISYTKHLFLLTIFTKPHSGFHVAFKMLN

Parental  ADGNEMIEKKEFYKLQKIISKQDDLMTVKINETEYQEPTVKEPEIKTTLQMHFFGKKGERK-LHYKEFR-
          ADGN.MI...EFYKL.KIISKQDD.MT.K.N.TEYQE.TVKEPEIK.TLQM.FFG.K.E......K.F..
Retrocopy ADGNYMIXXXEFYKLPKIISKQDDSMTMKTNKTEYQESTVKEPEIKATLQMCFFGEKKEKQNFITKNFK<

Parental  RFMESLQTEIQEMEFLQFSKGLNFMRKEDFAEWLLFFTNTDNKDIYWK-NVREKLSAGESISLDEFKSFC
          RFME.LQTEIQEME..QFSKGLNFMRKEDF.EWLLFFTNTDNKDI..K....E.LSAGESISLDEFKSFC
Retrocopy RFMENLQTEIQEMELVQFSKGLNFMRKEDFVEWLLFFTNTDNKDIHLK<KMWEELSAGESISLDEFKSFC

Parental  HFTTHLEDFAIAMQMF-SLAHRPVRLAEFK
          HFTT.LE.F.IAMQMF..LAH.PVRL.EFK
Retrocopy HFTTQLEEFVIAMQMF<CLAHHPVRLVEFK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2358 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000007540	1 retrocopy	retro_ogar_2358 ,