RetrogeneDB ID: retro_ogar_2362

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873615.1:7125236..7126334(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ADSL
• Ensembl ID: ENSOGAG00000015435
• Aliases: None
• Description: adenylosuccinate lyase [Source:HGNC Symbol;Acc:291]

Sequence

>retro_ogar_2362
AATACAGACCTGCTTATTCTTAGAAATGCATTTGACCGGCTTCTGCCAAAGTTTGCCAGAGTCATCTCTTGGCTTGCCAA
CTTTGCTAAAGAACAAGCTGATCTACCCACATTAGGTTTCACACATTTTTTTCAGCCTGCTCAGCTGACCATAGTTGGGA
AACATTGCTGTCTTTGGCTTCAGGATCTTTGGATTGATCTCCAGAACTTAAAGCGTGTCCAGGATGACCTGTGCTTCCAG
GGAGTGAAGAGTACCACTAGTACTCAGGCCAGCTTCTTGCAGCTCTTCAAAGGTGATCACCAAAAGGTAGAACAGCTTGA
CAAGATGGTGACAGAAAAGGCAGGATTTAAGAGGAGTTTCATTATCACAGGTCAGATCTATACACGAAAAGTAGAAATGG
AAGTTCTGTCTGTGCTGGCTAGCTTGGGGGCATCGGTGCATAAGATTTGCACGGACATACGGCTTCTGGCAAACCTCAAG
GAGATGGAGGAACCCTTTGAAAAACAGCAGATTGGTTCAAGTGCAATGCGGCATAAGCGGAACCCCCATGCGCTCAGAAG
GGTACTGCAGCCTTGCCTGATGACCCTTGTCATGGACCCACTGCAGACTACATATGTGCAATGGTTTGAACGCACACTGG
ATGATAGTGCCAACTGACGTATCTGTTTGGCTGAGGCATTTCTTACTGCAGATACTATATTGAATATGCTACAGAACATT
TCTGAAGGATTGGTGGTGCACCCCAAAGTAATTGAACAGTGCATTCGGCAAGAGCTGCCTTTCATGGCTACAGAGAATAT
CATCATGGCCATGGTCAAAGCTGAGGGTAGCCATCAGGATTGCCATGAGAAAATCAGAGTGCTCTCTTGGCAGGCAGCTG
CTGTGGTTAAGCAGGAAGGGGGTGACAATGACCTCATTGAGCATATCCAGGCTGATGCCTACTTCAGTCCCATTCACACC
CAGTTGGACCATTTACTGGCCCCTTCTTCTTTCACCAGTTGTGCAGCCCAACAGGTACAGAGATTCTTAGAAGAGGAAGT
TTATCCCCTGTTAAAACCATATGAAAATGTGATGGAGGTGAAAGCAGAATTATGTCTA

Alignment

ORF - retro_ogar_2362 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.5 %
• Parental protein coverage: 75.83 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NTDLIILRNAFDLLLPKLARVISRLASFAKERADLPTLGFTHF-QPAQLTTVGKRCCLWIQDLCIDLQNL
          NTDL.ILRNAFD.LLPK.ARVIS.LA.FAKE.ADLPTLGFTHF.QPAQLT.VGK.CCLW.QDL.IDLQNL
Retrocopy NTDLLILRNAFDRLLPKFARVISWLANFAKEQADLPTLGFTHFFQPAQLTIVGKHCCLWLQDLWIDLQNL

Parental  KRVQDDLRFRGVKGTTGTQASFLQLFEGDHQKVEQLDKMVTEKAGFKRSFIITGQTYTRKVDIEVLSVLA
          KRVQDDL.F.GVK.TT.TQASFLQLF.GDHQKVEQLDKMVTEKAGFKRSFIITGQ.YTRKV..EVLSVLA
Retrocopy KRVQDDLCFQGVKSTTSTQASFLQLFKGDHQKVEQLDKMVTEKAGFKRSFIITGQIYTRKVEMEVLSVLA

Parental  SLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQW
          SLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAM..KRNP....R...L...LMTLVMDPLQT..VQW
Retrocopy SLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMRHKRNPHALRRV--LQPCLMTLVMDPLQTTYVQW

Parental  FERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSR
          FERTLDDSAN.RICLAEAFLTADTILN.LQNISEGLVV.PKVIE..IRQELPFMATENIIMAMVKA.GS.
Retrocopy FERTLDDSAN*RICLAEAFLTADTILNMLQNISEGLVVHPKVIEQCIRQELPFMATENIIMAMVKAEGSH

Parental  QDCHEKIRVLSQQAAAVVKQEGGDNDLIERIQADAYFSPIHAQLDCLLDPSSFTGCAAQQVQRFLEEEVY
          QDCHEKIRVLS.QAAAVVKQEGGDNDLIE.IQADAYFSPIH.QLD.LL.PSSFT.CAAQQVQRFLEEEVY
Retrocopy QDCHEKIRVLSWQAAAVVKQEGGDNDLIEHIQADAYFSPIHTQLDHLLAPSSFTSCAAQQVQRFLEEEVY

Parental  PLLKPYENVMEVKAELCL
          PLLKPYENVMEVKAELCL
Retrocopy PLLKPYENVMEVKAELCL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2362 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000015435	1 retrocopy	retro_ogar_2362 ,