RetrogeneDB ID:

retro_ogar_2428

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873622.1:7117457..7118933(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000034460
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:NAA25
Ensembl ID:ENSOGAG00000012003
Aliases:None
Description:N(alpha)-acetyltransferase 25, NatB auxiliary subunit [Source:HGNC Symbol;Acc:25783]


Retrocopy-Parental alignment summary:






>retro_ogar_2428
CAGGACTCGAACAATAGGCGCCTCTGGCCCATTTATGCCATCTTGATAGTGGTAACAATAAAATGGAATTCAGCAAACAG
ATAAACTGTTGAAGAAACATAAGGATCTTCATTGTGCTAAGGTCTTAAAGGCAATTGGTCTACAGAGAACTGGAAAGCAA
GAAGCCTTCACCTTGGCCCAGGAGAAGGCAGCCCTTGAACCCACAGATGACAACTCACTGCGGGCACTGACTGTTCTTTA
CTGGGAGATGCATCAGCCGGAGTTAGTTACCAAACTTTATGAGGCAGCTGTGAAGAAAGGTCCCAATAGTGAGGAGTATC
ACTCTCACCTTTAACGGCCTATGCCAGAGTGAGCGAATACAAGAATATGCAACAGGCTGGCATGGCTCTATATAAGATTG
TCCCTAAAAACCCTTACTCCTTTGGTCTGTGATGAGCTTAATTATGCAATCTATATCAGCACGGGATGAAAACCTCTCAA
AAACAATGTTTCTGCTGCTTGCTGAGGGGATGGTTGAAAAAATGGTGAAAGAGGACAAGATAGAAGCTGAGGCTGAAGTT
GAACTTTATTATATGATCCTGGAATGTTTAGGAAAGTACCAGGAAGTCTTGGATGTCATCAGAGGGAAATTAGGAGAGAA
ACTGACAAGTGAGATTCAGAGTCAAGAAAATAAATGCATGGCTATGTACAAGAAGTTGAGCAAGTGGCCAGAGTGCAATG
CCCTTTCTCAGCGCCTCTTACTCAAAACTCAGATGACTGGTAGTTCTATCTGACTTATTTTGATCCTGTCTTTCGACTGA
TTGATGAAGCCTGGACTCCTCCTGCTGAAGGTGAACATTCTTTAGAAGGGGAAGTACATTATTCCACAAAAGAAGCTGTG
AAGCTTATAGAAAATTGGATAACAGAAGAATCTAAAAGTTCTCGACATCTTCGAGGACCACATCTAGCTAAACTGGAGCT
GATTAGGCATTTATGAAGTCAAGGTTGGAATGATGACTATAAACTGGGGGATCCAGAAGAATTAATGTTCCAGTATTTTA
AAAAGTTTGGGGATAAACCTTGTTTTACAGATCTTAAGGTGTTTGTTGACCTTTTGCCCACTACACAGTGTACAAAATTT
ATTAATCAGTTACTTGGAGTTGTTCCTTTGTCGACACCAACAGAGGATAAACTGGCACCACCGGCTGACATTAGAGCTCT
GCAGCAACATCTGTGTGTGGTGCAGCTGACAAGGTTACTTGGCTTGTATCACACCATGGATAAAAATCAGAAATTGAATG
TGGTCAGAGAATTGATAGTAAGGTACCAGCATGAACTGGAGTTTGGAAAGTCCTGTTTGGAAACAGAATTGCAGTTTTCT
GACTATTATTGTCTCCTTGCTGTCCATGTACTTACTGATATATGGAGAGAAACTGGTGACAAGACCGCTGTGTGGCAGGC
TCTGACTGGCAAGAAGAGGGATTGACCCATAGCCCT

ORF - retro_ogar_2428 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.44 %
Parental protein coverage: 51.03 %
Number of stop codons detected: 2
Number of frameshifts detected 6


Retrocopy - Parental Gene Alignment:

ParentalQDPNDRRLRPIYD-YLDNGNNKM-AIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALE
QD.N.RRL.PIY...LD.GNNKM..IQQ.DKLLKKHKDLHCAKVLKAIGLQRTGKQE.AFTLAQE.AALE
RetrocopyQDSNNRRLWPIYA<HLDSGNNKM<GIQQTDKLLKKHKDLHCAKVLKAIGLQRTGKQE-AFTLAQEKAALE
ParentalPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHL-FMAYARVGEYKKMQQAGMALYKIVP
PTDDNSL.ALT.LY.EMH.PELVTKLYEAAVKK.PNSEEYHSHL...AYARV.EYK.MQQAGMALYKIVP
RetrocopyPTDDNSLRALTVLYWEMHQPELVTKLYEAAVKKGPNSEEYHSHL<LTAYARVSEYKNMQQAGMALYKIVP
ParentalKNPYYF-WSVMSLIMQSISAQDENLSKTMFLPLAERMVEKMVKEDKIEAEAEVELYYMILERLGKYQEAL
KNPY.F.WSVMSLIMQSISA.DENLSKTMFL.LAE.MVEKMVKEDKIEAEAEVELYYMILE.LGKYQE.L
RetrocopyKNPYSF<WSVMSLIMQSISARDENLSKTMFLLLAEGMVEKMVKEDKIEAEAEVELYYMILECLGKYQEVL
ParentalDVIRGKLGEKLTSEIQSRENKCMAMYKKLSKWPECNALSRRLLLK-NSDDWQFYLTYFDSVFRLIDEAWT
DVIRGKLGEKLTSEIQS.ENKCMAMYKKLSKWPECNALS.RLLLK.NSDDW.FYLTYFD.VFRLIDEAWT
RetrocopyDVIRGKLGEKLTSEIQSQENKCMAMYKKLSKWPECNALSQRLLLK<NSDDW*FYLTYFDPVFRLIDEAWT
ParentalPPAEGEHSLEGEVHYSTEEAVKFIEDRITEESKSSRHLRGPHLAKLELIRRLRSQGCNDEYKLGDPEELM
PPAEGEHSLEGEVHYST.EAVK.IE..ITEESKSSRHLRGPHLAKLELIR.L.SQG.ND.YKLGDPEELM
RetrocopyPPAEGEHSLEGEVHYSTKEAVKLIENWITEESKSSRHLRGPHLAKLELIRHL*SQGWNDDYKLGDPEELM
ParentalFQYFKKFGDKPCCFTDLKVFVDLLPTTQCTKFINQLLGVVPLSTPTEDKLALPADIRALQQHLCVVQLTR
FQYFKKFGDKP.CFTDLKVFVDLLPTTQCTKFINQLLGVVPLSTPTEDKLA.PADIRALQQHLCVVQLTR
RetrocopyFQYFKKFGDKP-CFTDLKVFVDLLPTTQCTKFINQLLGVVPLSTPTEDKLAPPADIRALQQHLCVVQLTR
ParentalLLGLYHTMDKNQKLNVVRELMLRYQHGLEFGKSCLKTELQFSDYYCLLAVHVLIDIWRETGDETAVWQAL
LLGLYHTMDKNQKLNVVREL..RYQH.LEFGKSCL.TELQFSDYYCLLAVHVL.DIWRETGD.TAVWQAL
RetrocopyLLGLYHTMDKNQKLNVVRELIVRYQHELEFGKSCLETELQFSDYYCLLAVHVLTDIWRETGDKTAVWQAL
ParentalT-LLEEGLTHSP
T...EEGLTHSP
RetrocopyT<WQEEGLTHSP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_2428 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Otolemur garnettii ENSOGAG00000012003 1 retrocopy
retro_ogar_2428 ,


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