RetrogeneDB ID: retro_ogar_243

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873770.1:425707..426319(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000030416
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000002850
• Aliases: None
• Description: None

Sequence

>retro_ogar_243
ATGTTCATCCTGGTGGAGATGGCGGACACCGTGGGAATCCCACTGTGGCAGTTGGAGAGGAAGCTCAACAACTCCATTGC
CGAGGAGCTGAACAAGAAGTTAACCAACAAGGTTGTGTACAACGTGGGACTCTGCATCTGTCTGTTTGCCATCACCAAAC
TGGAGGATGCCTACGTGTCGCCAGGGGATGACATGTCACACACCAAAGTCCATTTTCCCTATGTGGTCTTCCATCCTTTC
CTGGACGAGATTCTGATTGGGAAGATCAAAGGCTGTAGCCCCGAGGGAGTACACGTCTCTCTAGGGTTCTTCGATGACAT
CCTTATCCCTCCGGAGTCGCTGCAGCAGCCAGCCAAGTTTGACGATGCAGAGCAGGTGTGGGTGTGGGAATATGAGACAG
AGGAAGGAGCACACGACCTGTACATGGACACTGGTGAGGAGATTCACTTCCAGGTCGTGGACCAGAGCTTTGTGGGTACG
TCCCCAACAGGACCCAGCTCGGCTGAGGCTACCACTTCCCGTGAGGAGCTGCCGAAGAAGGAGGCCCCATACGCACTGGT
GGGATCCATCAGTGAGCCAGGCCTGGGCCACCTTTCCTGGTGGACCAGCAGT

Alignment

ORF - retro_ogar_243 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.2 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKV
          MF.LVEM.DTV.IP.WQ.ERKLN.SIAEELNKKL.NKVVYNVGLCICLF.ITKLEDAYV.PGD..SHTKV
Retrocopy MFILVEMADTVGIPLWQLERKLNNSIAEELNKKLTNKVVYNVGLCICLFAITKLEDAYVSPGDDMSHTKV

Parental  HFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKFDDAEQVWVWEYETEEGAHDL
          HF.YVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKFDDAEQVWVWEYETEEGAHDL
Retrocopy HFPYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKFDDAEQVWVWEYETEEGAHDL

Parental  YMDTGEEIRFRVVDESFVDTSPTGPSSAEATTSSEEQPKKEAPYTLVGSISEPGLGLLSWWTSS
          YMDTGEEI.F.VVD.SFV.TSPTGPSSAEATTS.EE.PKKEAPY.LVGSISEPGLG.LSWWTSS
Retrocopy YMDTGEEIHFQVVDQSFVGTSPTGPSSAEATTSREELPKKEAPYALVGSISEPGLGHLSWWTSS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_243 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000010464	1 retrocopy	retro_eeur_538,
Otolemur garnettii	ENSOGAG00000002850	1 retrocopy	retro_ogar_243 ,
Pongo abelii	ENSPPYG00000011872	1 retrocopy	retro_pabe_167,