RetrogeneDB ID: retro_ogar_247

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873606.1:7143980..7144265(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000026068
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000014401
• Aliases: None
• Description: None

Sequence

>retro_ogar_247
ATGGCATCTCTTCGCCACATCTTGGTTCTCTGTGTGGGTCTTCTTGTCACGGCTGACGCAGAAGGTTCAAAGAAGGAACA
TGACCCGTTCACCTATGACTATCACTCCCTGAGAATCGGAGACCTCACCATCGCTGGGATCCTCTTCATCCTGGACATCC
TTATCGTGCTCAGTAAAAGATACCAGTGTAAATTCAACCAGCAGCAGAAGACTGGGGAACCTGATGAAGAGGTTTCCGCA
GCCGCGTTCCGCAGCTCCATCTGCCGTCCAGCGCAGGTGGTAGAA

Alignment

ORF - retro_ogar_247 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.15 %
• Parental protein coverage: 93.55 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MASLGHILVLCVGLLATADAENPKKEHDPFTYDYRSLRIGGLTIAGILFILGILIVLSKRCRCKFNQQQK
          MASL.HILVLCVGLL.TADAE..KKEHDPFTYDY.SLRIG.LTIAGILFIL.ILIVLSKR..CKFNQQQK
Retrocopy MASLRHILVLCVGLLVTADAEGSKKEHDPFTYDYHSLRIGDLTIAGILFILDILIVLSKRYQCKFNQQQK

Parental  TGEPDEE--EGTFRSSIRR
          TGEPDEE.....FRSSI.R
Retrocopy TGEPDEEVSAAAFRSSICR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_247 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000014401	1 retrocopy	retro_ogar_247 ,
Otolemur garnettii	ENSOGAG00000015394	2 retrocopies	retro_ogar_2451, retro_ogar_3061,