RetrogeneDB ID: retro_ogar_2646

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873643.1:4561880..4562437(+)
• Located in intron of: ENSOGAG00000013161

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: B5FWB1_OTOGA
• Ensembl ID: ENSOGAG00000006936
• Aliases: None
• Description: PRP31 pre-mRNA processing factor 31 homolog (Predicted) [Source:UniProtKB/TrEMBL;Acc:B5FWB1]

Sequence

>retro_ogar_2646
ATGGCGCTGGAGCTGACTGCCTCAAACCACTGCATCTACCAGTACATGGAGTCCTGCATGTCCTTCATTGAGCCCAACTT
GTCCATCATCATCAGGGCATCCACAGCTGCCAAGATCATGGGTGTGTCTGGCAGCCTGACCAACCTCTCCAGGATGCCCG
CCTGCAACATAATGCTTCTTGGCATCTGGCACAAGACACTGTCTGGCTTCTCATCTATCTCTGTGCTGCTCCACACTGGC
TACATCTACCACAGTGACATTGTGCAGTCGCTGCCCCTGGATCTCTGGCAGAAAGCAGCCAGCTGGTGGCCTCCAGGTGC
ACATTGGCAGCCCGCATGGACAGTTTTCATGAAAGCACAGAGGGGAAGGTGAGCTACGAACTGAAGGATGAGACAGAGCA
TGAATTTGACAAGTGGCAGGAGCCCATGAAGCAAGTGAAGCCATTGCCTGCCCCCCTGGATGGCCAGCGAAAGAAGGGAG
GCGGCTGCAGGTACAGCAAGATGAAGGAGCGGCTGGGGTTGACAGAGATCTGGAAGCAGGCCAACCGCACGAGCTTC

Alignment

ORF - retro_ogar_2646 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.95 %
• Parental protein coverage: 61.24 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGF
          MALEL.AS.H.IY.Y.ES.MSFI.PNLSIII.ASTAAKIMGV.G.LTNLS.MPACNIMLLG...KTLSGF
Retrocopy MALELTASNHCIYQYMESCMSFIEPNLSIIIRASTAAKIMGVSGSLTNLSRMPACNIMLLGIWHKTLSGF

Parental  SSTSVLPHTGYIYHSDIVQSLPPDLRRKAA-RLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKW
          SS.SVL.HTGYIYHSDIVQSLP.DL..KAA..LVA..CTLAAR.DSFHESTEGKV.YELKDE.E..FDKW
Retrocopy SSISVLLHTGYIYHSDIVQSLPLDLWQKAA<QLVASRCTLAARMDSFHESTEGKVSYELKDETEHEFDKW

Parental  QEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSF
          QE..P.KQVKPLPAPLDGQRKK.GG.RY.KMKERLGLTEI.KQANR.SF
Retrocopy QE--PMKQVKPLPAPLDGQRKKGGGCRYSKMKERLGLTEIWKQANRTSF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2646 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000006936	1 retrocopy	retro_ogar_2646 ,
Rattus norvegicus	ENSRNOG00000013504	1 retrocopy	retro_rnor_1214,